Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014- 09-26] 482,396 sequences; 1,258,717,181 total letters Query= NC_024700.1 Length=1773 Score E Sequences producing significant alignments: (Bits) Value seq192907 235 6e-59 seq16718 181 1e-42 seq55868 159 4e-36 seq251874 149 7e-33 seq32853 138 1e-29 >seq192907 Length=1861 Score = 235 bits (260), Expect = 6e-59 Identities = 268/358 (75%), Gaps = 4/358 (1%) Strand=Plus/Plus Query 452 ATTTTCCAACAGAAGTTTATTACTACTATGGTGAACCAGGTGTGGGAAAATCACGTAGAG 511 ||||| ||| ||||| || ||||||| || |||||||| || ||||| ||| ||||| Sbjct 910 ATTTTAAAACGGAAGTCTAATACTACTGGGGAGAACCAGGAGTCGGAAAGTCATCTAGAG 969 Query 512 CTTATTCAGAAGCCAAAGCTACAAATGAATCAATTTACTACAAACCCAGAGGAGATTGGT 571 | | |||| || | ||| || | | || | ||| |||| ||| | | |||| Sbjct 970 CCTTGGCAGAGGCTACTGCTTACGGTGGACCTATCTTCTATAAACAACGAGAAAAATGGT 1029 Query 572 GGGATGGATACGAACAACAACCAAATGTTATCATCGACGATTTCTACGGATGGATCAAAT 631 |||| ||||||||| | ||||||||||| ||||||||||||||||||||||||||| || Sbjct 1030 GGGACGGATACGAATACCAACCAAATGTCATCATCGACGATTTCTACGGATGGATCGCAT 1089 Query 632 ACGACGAACTATTAAAAATAATGGATAGATACCCATACAGAGTACCAGTAAAAGGAGGA- 690 | ||||| || | |||||| |||||||| || ||| | ||||| | ||||||||| Sbjct 1090 ATGACGAGCTTCTCAAAATATGCGATAGATATCCTTACCGCGTACCCATCAAAGGAGGAT 1149 Query 691 -TACCAAATTTTTAACTCAAAAAGAATTTGGATAACATCTAATATCCCCATTGACCAATT 749 || |||||| | ||| | |||| ||||| ||||| ||||| ||||| |||| | Sbjct 1150 TTAGAAAATTTGT--TTCACTACGAATATGGATTACATCCAATATTCCCATAAGCCAACT 1207 Query 750 ATATAAACATTCCCATTTCATTCCCCAAGCCATCGAAAGACGATGTACAAAAATTGAA 807 |||||||| |||||| |||| |||| |||||| | |||||||||||||| ||| Sbjct 1208 TTATAAACACGACCATTTTTATCCCAAAGCTATCGAACGCCGATGTACAAAAATAGAA 1265 >seq16718 Length=10213 Score = 181 bits (200), Expect = 1e-42 Identities = 218/294 (74%), Gaps = 8/294 (3%) Strand=Plus/Minus Query 518 CAGAAGCCAAAGCTACAAATGAATCAATTTACTACAAACCCAGAGGAGATTGGTGGGATG 577 ||||||| | ||| | || | | |||| |||||||| |||| | | |||||||| | Sbjct 9264 CAGAAGCTACTGCTGCGGGTGGACCCATTTTCTACAAACAAAGAGAAAAGTGGTGGGACG 9205 Query 578 GATACGAACAACAACCAAATGTTATCATCGACGATTTCTACGGATGGATCAAATACGACG 637 |||||||| | |||||||| || || || ||||| ||||||||||||||| |||||||| Sbjct 9204 GATACGAATATCAACCAAACGTCATTATTGACGACTTCTACGGATGGATCGCATACGACG 9145 Query 638 AACTATTAAAAATAATGGATAGATACCCATACAGAGTACCAGTAAAAGGAGGA--TACCA 695 | || | ||| || ||| |||| ||||||||||| || | ||||||||| || | Sbjct 9144 AGCTTCTTAAAGTATGTGATCGATATCCATACAGAGTTCCCATCAAAGGAGGATTTAGAA 9085 Query 696 AA--TTTTTAACTCAAAAAGAATTTGGATAACATCTAATATCCCCATTGACCAATTATAT 753 || | ||| |||| |||| ||||| || || ||| | ||||| ||| | || Sbjct 9084 AATGTGTTTCACTC----CGAATCTGGATTACCTCAAATGTACCCATAAACCTTCTCTAA 9029 Query 754 AAACATTCCCATTTCATTCCCCAAGCCATCGAAAGACGATGTACAAAAATTGAA 807 ||||| ||||| ||| |||| ||||||||||||||||||||||||||| Sbjct 9028 AAACACGAACATTTTTACCCCAAAGCTATCGAAAGACGATGTACAAAAATTGAA 8975 >seq55868 Length=5588 Score = 159 bits (176), Expect = 4e-36 Identities = 288/421 (68%), Gaps = 0/421 (0%) Strand=Plus/Minus Query 387 TTATGTTAGATATTGGAGAGGTCTGTACAAGCTTAAAGAAACGCTTGCTCCGCCACCAGA 446 ||||||| | || |||||||| || | || || || || | || | || || Sbjct 1935 TTATGTTCGCTACTGGAGAGGACTTGAAAAACTCAACGACATCCTCAATGAACCCGAGGA 1876 Query 447 AAGAGATTTTCCAACAGAAGTTTATTACTACTATGGTGAACCAGGTGTGGGAAAATCACG 506 ||| |||| |||| | || | || || |||| | ||||||||| || |||||| Sbjct 1875 TAGATATTTCAAAACACAGGTATTCTATTATCATGGGGCACCAGGTGTAGGGAAATCATC 1816 Query 507 TAGAGCTTATTCAGAAGCCAAAGCTACAAATGAATCAATTTACTACAAACCCAGAGGAGA 566 |||| | | ||||| | |||| || | | || | ||| |||| |||| | Sbjct 1815 CCGAGCCTTGGCTGAAGCTACTGCTATCGGTGGACCCATCTTCTATAAACAAAGAGACAA 1756 Query 567 TTGGTGGGATGGATACGAACAACAACCAAATGTTATCATCGACGATTTCTACGGATGGAT 626 |||||||| ||||| ||| | ||| || | |||||||| || || ||||||||||| Sbjct 1755 ATGGTGGGACGGATATGAATACCAAGACAACATCATCATCGATGACTTTTACGGATGGAT 1696 Query 627 CAAATACGACGAACTATTAAAAATAATGGATAGATACCCATACAGAGTACCAGTAAAAGG 686 | | |||||||| | |||||| ||| ||||||| || |||| || | ||||| Sbjct 1695 ACCACATGACGAACTTCTTAAAATATGTGATCGATACCCCTATCGAGTGCCTATCAAAGG 1636 Query 687 AGGATACCAAATTTTTAACTCAAAAAGAATTTGGATAACATCTAATATCCCCATTGACCA 746 ||| | | || ||| || | | | || ||||| || || |||||||| || || || Sbjct 1635 AGGCTTTCGAAAGTTTGTGTCTAGACGGATCTGGATTACCTCCAATATCCCAATAGAACA 1576 Query 747 ATTATATAAACATTCCCATTTCATTCCCCAAGCCATCGAAAGACGATGTACAAAAATTGA 806 |||||| ||||| |||||||| || |||||||| || | | |||||||||||||| Sbjct 1575 ATTATACAAACAAGACCATTTCAACCCAGAAGCCATCCGAAAAAGGTGTACAAAAATTGA 1516 Query 807 A 807 | Sbjct 1515 A 1515 >seq251874 Length=1306 Score = 149 bits (164), Expect = 7e-33 Identities = 207/288 (72%), Gaps = 4/288 (1%) Strand=Plus/Plus Query 459 AACAGAAGTTTATTACTACTATGGTGAACCAGGTGTGGGAAAATCACGTAGAGCTTATTC 518 ||| || || |||||||| || || |||| ||||| ||||| || || |||| Sbjct 412 AACTGAGGTATATTACTATTACGGCCAACCGGGTGTAGGAAAGTCTCGACGAGCCCTCGA 471 Query 519 AGAAGCCAAAGCTACAAATGAATCAATTTACTACAAACCCAGAGGAGATTGGTGGGATGG 578 |||||| ||| |||| | || | || |||| ||||| ||||||||| || Sbjct 472 AGAAGCTTCTGCTGTCGGTGAACCTATCTTTTATAAACAACGAGGACCTTGGTGGGACGG 531 Query 579 ATACGAACAACAACCAAATGTTATCATCGACGATTTCTACGGATGGATCAAATACGACGA 638 ||| || ||||| || || ||||| ||||| ||||||||||||||| |||||||| Sbjct 532 ATATGACTTCCAACCCAACGTCATCATTGACGACTTCTACGGATGGATCGCCTACGACGA 591 Query 639 ACTATTAAAAATAATGGATAGATACCCATACAGAGTACCAGTAAAAGGAGGA--TACCAA 696 || | |||||| |||||||| ||||||||||| || | ||||| ||| || || Sbjct 592 GCTTCTTAAAATATGTGATAGATATCCATACAGAGTGCCCATCAAAGGCGGATTTAGAAA 651 Query 697 ATTTTTAACTCAAAAAGAATTTGGATAACATCTAATATCCCCATTGAC 744 |||| | ||||| ||||| ||||| ||||| ||| | ||||| ||| Sbjct 652 ATTTGT--TTCAAAGAGAATATGGATTACATCCAATGTTCCCATAGAC 697 >seq32853 Length=7534 Score = 138 bits (152), Expect = 1e-29 Identities = 257/375 (69%), Gaps = 13/375 (3%) Strand=Plus/Minus Query 445 GAAAGAGATTTTCCAACAGAAGTTTATTACTACTATGGTGAACCAGGTGTGGGAAAATCA 504 || ||| |||| |||||| || | | || |||| | ||||||||| ||||| ||| Sbjct 6623 GATAGATATTTCAAAACAGAGGTATTCCATTATCATGGGGCACCAGGTGTAGGAAAGTCA 6564 Query 505 CGTAGAGCTTATTCAGAAGCCAAAGCTACAAATGA------ATCAATTTACTACAAACCC 558 | ||||| |||| ||||||| |||| ||| |||| ||| || | Sbjct 6563 AGAAGAGCCCTG---GAAG---AAGCTACTAATGTCGGTGGATCCATTTTCTATAAGCAA 6510 Query 559 AGAGGAGATTGGTGGGATGGATACGAACAACAACCAAATGTTATCATCGACGATTTCTAC 618 ||| | ||||||||||| |||||| | || |||||||||||||| || || ||| Sbjct 6509 CGAGACAAGTGGTGGGATGGCTACGAATATCAGGACAATGTTATCATCGATGACTTTTAC 6450 Query 619 GGATGGATCAAATACGACGAACTATTAAAAATAATGGATAGATACCCATACAGAGTACCA 678 |||||||| ||| | |||||| | |||||| ||| ||||||| || |||| || Sbjct 6449 GGATGGATACCATATGGCGAACTTCTTAAAATATGTGATCGATACCCCTATCGAGTGCCT 6390 Query 679 GTAAAAGGAGGATACCAAATTTTTAACTCAAAAAGAATTTGGATAACATCTAATATCCCC 738 | |||||||| | | || ||| || | | | || || || || || ||| | || Sbjct 6389 ATTAAAGGAGGCTTTCGAAAGTTTGTGTCTAGACGGATCTGAATTACCTCCAATGT-CCA 6331 Query 739 ATTGACCAATTATATAAACATTCCCATTTCATTCCCCAAGCCATCGAAAGACGATGTACA 798 || |||||| | || |||||| |||||| | || | ||||| | | || |||||| Sbjct 6330 ATAGACCAACTTTACAAACATGACCATTTTAACCCAGATGCCATTAGACGCCGTTGTACA 6271 Query 799 AAAATTGAATATATG 813 ||||||||| | ||| Sbjct 6270 AAAATTGAAGAAATG 6256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5536277854104