Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014-
09-26] 482,396 sequences; 1,258,717,181 total letters
Query= NC_024700.1
Length=1773
Score E
Sequences producing significant alignments: (Bits) Value
seq192907 235 6e-59
seq16718 181 1e-42
seq55868 159 4e-36
seq251874 149 7e-33
seq32853 138 1e-29
>seq192907
Length=1861
Score = 235 bits (260), Expect = 6e-59
Identities = 268/358 (75%), Gaps = 4/358 (1%)
Strand=Plus/Plus
Query 452 ATTTTCCAACAGAAGTTTATTACTACTATGGTGAACCAGGTGTGGGAAAATCACGTAGAG 511
||||| ||| ||||| || ||||||| || |||||||| || ||||| ||| |||||
Sbjct 910 ATTTTAAAACGGAAGTCTAATACTACTGGGGAGAACCAGGAGTCGGAAAGTCATCTAGAG 969
Query 512 CTTATTCAGAAGCCAAAGCTACAAATGAATCAATTTACTACAAACCCAGAGGAGATTGGT 571
| | |||| || | ||| || | | || | ||| |||| ||| | | ||||
Sbjct 970 CCTTGGCAGAGGCTACTGCTTACGGTGGACCTATCTTCTATAAACAACGAGAAAAATGGT 1029
Query 572 GGGATGGATACGAACAACAACCAAATGTTATCATCGACGATTTCTACGGATGGATCAAAT 631
|||| ||||||||| | ||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 1030 GGGACGGATACGAATACCAACCAAATGTCATCATCGACGATTTCTACGGATGGATCGCAT 1089
Query 632 ACGACGAACTATTAAAAATAATGGATAGATACCCATACAGAGTACCAGTAAAAGGAGGA- 690
| ||||| || | |||||| |||||||| || ||| | ||||| | |||||||||
Sbjct 1090 ATGACGAGCTTCTCAAAATATGCGATAGATATCCTTACCGCGTACCCATCAAAGGAGGAT 1149
Query 691 -TACCAAATTTTTAACTCAAAAAGAATTTGGATAACATCTAATATCCCCATTGACCAATT 749
|| |||||| | ||| | |||| ||||| ||||| ||||| ||||| |||| |
Sbjct 1150 TTAGAAAATTTGT--TTCACTACGAATATGGATTACATCCAATATTCCCATAAGCCAACT 1207
Query 750 ATATAAACATTCCCATTTCATTCCCCAAGCCATCGAAAGACGATGTACAAAAATTGAA 807
|||||||| |||||| |||| |||| |||||| | |||||||||||||| |||
Sbjct 1208 TTATAAACACGACCATTTTTATCCCAAAGCTATCGAACGCCGATGTACAAAAATAGAA 1265
>seq16718
Length=10213
Score = 181 bits (200), Expect = 1e-42
Identities = 218/294 (74%), Gaps = 8/294 (3%)
Strand=Plus/Minus
Query 518 CAGAAGCCAAAGCTACAAATGAATCAATTTACTACAAACCCAGAGGAGATTGGTGGGATG 577
||||||| | ||| | || | | |||| |||||||| |||| | | |||||||| |
Sbjct 9264 CAGAAGCTACTGCTGCGGGTGGACCCATTTTCTACAAACAAAGAGAAAAGTGGTGGGACG 9205
Query 578 GATACGAACAACAACCAAATGTTATCATCGACGATTTCTACGGATGGATCAAATACGACG 637
|||||||| | |||||||| || || || ||||| ||||||||||||||| ||||||||
Sbjct 9204 GATACGAATATCAACCAAACGTCATTATTGACGACTTCTACGGATGGATCGCATACGACG 9145
Query 638 AACTATTAAAAATAATGGATAGATACCCATACAGAGTACCAGTAAAAGGAGGA--TACCA 695
| || | ||| || ||| |||| ||||||||||| || | ||||||||| || |
Sbjct 9144 AGCTTCTTAAAGTATGTGATCGATATCCATACAGAGTTCCCATCAAAGGAGGATTTAGAA 9085
Query 696 AA--TTTTTAACTCAAAAAGAATTTGGATAACATCTAATATCCCCATTGACCAATTATAT 753
|| | ||| |||| |||| ||||| || || ||| | ||||| ||| | ||
Sbjct 9084 AATGTGTTTCACTC----CGAATCTGGATTACCTCAAATGTACCCATAAACCTTCTCTAA 9029
Query 754 AAACATTCCCATTTCATTCCCCAAGCCATCGAAAGACGATGTACAAAAATTGAA 807
||||| ||||| ||| |||| |||||||||||||||||||||||||||
Sbjct 9028 AAACACGAACATTTTTACCCCAAAGCTATCGAAAGACGATGTACAAAAATTGAA 8975
>seq55868
Length=5588
Score = 159 bits (176), Expect = 4e-36
Identities = 288/421 (68%), Gaps = 0/421 (0%)
Strand=Plus/Minus
Query 387 TTATGTTAGATATTGGAGAGGTCTGTACAAGCTTAAAGAAACGCTTGCTCCGCCACCAGA 446
||||||| | || |||||||| || | || || || || | || | || ||
Sbjct 1935 TTATGTTCGCTACTGGAGAGGACTTGAAAAACTCAACGACATCCTCAATGAACCCGAGGA 1876
Query 447 AAGAGATTTTCCAACAGAAGTTTATTACTACTATGGTGAACCAGGTGTGGGAAAATCACG 506
||| |||| |||| | || | || || |||| | ||||||||| || ||||||
Sbjct 1875 TAGATATTTCAAAACACAGGTATTCTATTATCATGGGGCACCAGGTGTAGGGAAATCATC 1816
Query 507 TAGAGCTTATTCAGAAGCCAAAGCTACAAATGAATCAATTTACTACAAACCCAGAGGAGA 566
|||| | | ||||| | |||| || | | || | ||| |||| |||| |
Sbjct 1815 CCGAGCCTTGGCTGAAGCTACTGCTATCGGTGGACCCATCTTCTATAAACAAAGAGACAA 1756
Query 567 TTGGTGGGATGGATACGAACAACAACCAAATGTTATCATCGACGATTTCTACGGATGGAT 626
|||||||| ||||| ||| | ||| || | |||||||| || || |||||||||||
Sbjct 1755 ATGGTGGGACGGATATGAATACCAAGACAACATCATCATCGATGACTTTTACGGATGGAT 1696
Query 627 CAAATACGACGAACTATTAAAAATAATGGATAGATACCCATACAGAGTACCAGTAAAAGG 686
| | |||||||| | |||||| ||| ||||||| || |||| || | |||||
Sbjct 1695 ACCACATGACGAACTTCTTAAAATATGTGATCGATACCCCTATCGAGTGCCTATCAAAGG 1636
Query 687 AGGATACCAAATTTTTAACTCAAAAAGAATTTGGATAACATCTAATATCCCCATTGACCA 746
||| | | || ||| || | | | || ||||| || || |||||||| || || ||
Sbjct 1635 AGGCTTTCGAAAGTTTGTGTCTAGACGGATCTGGATTACCTCCAATATCCCAATAGAACA 1576
Query 747 ATTATATAAACATTCCCATTTCATTCCCCAAGCCATCGAAAGACGATGTACAAAAATTGA 806
|||||| ||||| |||||||| || |||||||| || | | ||||||||||||||
Sbjct 1575 ATTATACAAACAAGACCATTTCAACCCAGAAGCCATCCGAAAAAGGTGTACAAAAATTGA 1516
Query 807 A 807
|
Sbjct 1515 A 1515
>seq251874
Length=1306
Score = 149 bits (164), Expect = 7e-33
Identities = 207/288 (72%), Gaps = 4/288 (1%)
Strand=Plus/Plus
Query 459 AACAGAAGTTTATTACTACTATGGTGAACCAGGTGTGGGAAAATCACGTAGAGCTTATTC 518
||| || || |||||||| || || |||| ||||| ||||| || || ||||
Sbjct 412 AACTGAGGTATATTACTATTACGGCCAACCGGGTGTAGGAAAGTCTCGACGAGCCCTCGA 471
Query 519 AGAAGCCAAAGCTACAAATGAATCAATTTACTACAAACCCAGAGGAGATTGGTGGGATGG 578
|||||| ||| |||| | || | || |||| ||||| ||||||||| ||
Sbjct 472 AGAAGCTTCTGCTGTCGGTGAACCTATCTTTTATAAACAACGAGGACCTTGGTGGGACGG 531
Query 579 ATACGAACAACAACCAAATGTTATCATCGACGATTTCTACGGATGGATCAAATACGACGA 638
||| || ||||| || || ||||| ||||| ||||||||||||||| ||||||||
Sbjct 532 ATATGACTTCCAACCCAACGTCATCATTGACGACTTCTACGGATGGATCGCCTACGACGA 591
Query 639 ACTATTAAAAATAATGGATAGATACCCATACAGAGTACCAGTAAAAGGAGGA--TACCAA 696
|| | |||||| |||||||| ||||||||||| || | ||||| ||| || ||
Sbjct 592 GCTTCTTAAAATATGTGATAGATATCCATACAGAGTGCCCATCAAAGGCGGATTTAGAAA 651
Query 697 ATTTTTAACTCAAAAAGAATTTGGATAACATCTAATATCCCCATTGAC 744
|||| | ||||| ||||| ||||| ||||| ||| | ||||| |||
Sbjct 652 ATTTGT--TTCAAAGAGAATATGGATTACATCCAATGTTCCCATAGAC 697
>seq32853
Length=7534
Score = 138 bits (152), Expect = 1e-29
Identities = 257/375 (69%), Gaps = 13/375 (3%)
Strand=Plus/Minus
Query 445 GAAAGAGATTTTCCAACAGAAGTTTATTACTACTATGGTGAACCAGGTGTGGGAAAATCA 504
|| ||| |||| |||||| || | | || |||| | ||||||||| ||||| |||
Sbjct 6623 GATAGATATTTCAAAACAGAGGTATTCCATTATCATGGGGCACCAGGTGTAGGAAAGTCA 6564
Query 505 CGTAGAGCTTATTCAGAAGCCAAAGCTACAAATGA------ATCAATTTACTACAAACCC 558
| ||||| |||| ||||||| |||| ||| |||| ||| || |
Sbjct 6563 AGAAGAGCCCTG---GAAG---AAGCTACTAATGTCGGTGGATCCATTTTCTATAAGCAA 6510
Query 559 AGAGGAGATTGGTGGGATGGATACGAACAACAACCAAATGTTATCATCGACGATTTCTAC 618
||| | ||||||||||| |||||| | || |||||||||||||| || || |||
Sbjct 6509 CGAGACAAGTGGTGGGATGGCTACGAATATCAGGACAATGTTATCATCGATGACTTTTAC 6450
Query 619 GGATGGATCAAATACGACGAACTATTAAAAATAATGGATAGATACCCATACAGAGTACCA 678
|||||||| ||| | |||||| | |||||| ||| ||||||| || |||| ||
Sbjct 6449 GGATGGATACCATATGGCGAACTTCTTAAAATATGTGATCGATACCCCTATCGAGTGCCT 6390
Query 679 GTAAAAGGAGGATACCAAATTTTTAACTCAAAAAGAATTTGGATAACATCTAATATCCCC 738
| |||||||| | | || ||| || | | | || || || || || ||| | ||
Sbjct 6389 ATTAAAGGAGGCTTTCGAAAGTTTGTGTCTAGACGGATCTGAATTACCTCCAATGT-CCA 6331
Query 739 ATTGACCAATTATATAAACATTCCCATTTCATTCCCCAAGCCATCGAAAGACGATGTACA 798
|| |||||| | || |||||| |||||| | || | ||||| | | || ||||||
Sbjct 6330 ATAGACCAACTTTACAAACATGACCATTTTAACCCAGATGCCATTAGACGCCGTTGTACA 6271
Query 799 AAAATTGAATATATG 813
||||||||| | |||
Sbjct 6270 AAAATTGAAGAAATG 6256
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 5536277854104
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |