Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014-
09-26] 482,396 sequences; 1,258,717,181 total letters
Query= NC_025476.1
Length=1865
Score E
Sequences producing significant alignments: (Bits) Value
seq251874 122 1e-24
seq192907 120 4e-24
seq16718 104 3e-19
seq55868 77.0 4e-11
>seq251874
Length=1306
Score = 122 bits (134), Expect = 1e-24
Identities = 202/286 (71%), Gaps = 7/286 (2%)
Strand=Plus/Minus
Query 896 TGTGATCCATATATATTTAGATACGAAGTTTTCATATCCTCCTTTGACAGGGACTCTGTA 955
||| |||||||| || || || || ||| | |||| ||||||| || ||||||||
Sbjct 679 TGTAATCCATATTCTCTTTGAAACAAATTTTCTAAATCCGCCTTTGATGGGCACTCTGTA 620
Query 956 AGGATATCTGTCGCAGATCTTGAGAAGCTCGTCGTATTTGATCCATCCGTAGAAGTCATC 1015
|||||||| || || || || |||||||||||||| |||||||||||||||||| ||
Sbjct 619 TGGATATCTATCACATATTTTAAGAAGCTCGTCGTAGGCGATCCATCCGTAGAAGTCGTC 560
Query 1016 GATAACAACGCAGGGTTGTCCGGTGTATCCATCCCACCATTCTCCGCGCGGCTTGTAGTA 1075
|| | ||| |||||| | ||||| |||||||| ||| || | || || |
Sbjct 559 AATGATGACGTTGGGTTGGAAGTCATATCCGTCCCACCAAGGTCCTCGTTGTTTATAAAA 500
Query 1076 G---GTTTCACCGAGAGC-GCGGCTTTCCTCGCGCGCTTTACGGGACTTTCC-AGTTCCA 1130
| | |||||||| ||| | || ||| ||| | ||| || |||||||| | ||
Sbjct 499 GATAGGTTCACCGACAGCAGAAGC-TTCTTCGAGGGCTCGTCGAGACTTTCCTACACCCG 441
Query 1131 GTTGATCCCCAAAAGTAAAAGACTTCCGTTTTAAAGTCTCGTTCTT 1176
|||| || || ||||| | || || ||||| || | || ||||
Sbjct 440 GTTG-GCCGTAATAGTAATATACCTCAGTTTTGAAATAGCGGTCTT 396
>seq192907
Length=1861
Score = 120 bits (132), Expect = 4e-24
Identities = 193/274 (70%), Gaps = 5/274 (2%)
Strand=Plus/Minus
Query 896 TGTGATCCATATATATTTAGATACGAAGTTTTCATATCCTCCTTTGACAGGGACTCTGTA 955
||| |||||||| | || || || ||| | |||||||||||| || || | |||
Sbjct 1184 TGTAATCCATATTCGTAGTGAAACAAATTTTCTAAATCCTCCTTTGATGGGTACGCGGTA 1125
Query 956 AGGATATCTGTCGCAGATCTTGAGAAGCTCGTCGTATTTGATCCATCCGTAGAAGTCATC 1015
||||||||| ||||| || |||||||||||||| ||| ||||||||||||||| || ||
Sbjct 1124 AGGATATCTATCGCATATTTTGAGAAGCTCGTCATATGCGATCCATCCGTAGAAATCGTC 1065
Query 1016 GATAACAACGCAGGGTTGTCCGGTGTATCCATCCCACCATTCTCCGCGCGGCTTGTAGTA 1075
||| | || ||||| |||||| |||||||||| | | || | || ||| |
Sbjct 1064 GATGATGACATTTGGTTGGTATTCGTATCCGTCCCACCATTTTTCTCGTTGTTTATAGAA 1005
Query 1076 G---GTTTCACCGAGAGC-GCGGCTTTCCTCGCGCGCTTTACGGGACTTTCCAGTTCCAG 1131
| | | ||||| ||| | || || | ||| || |||||||| ||| |
Sbjct 1004 GATAGGTCCACCGTAAGCAGTAGC-CTCTGCCAAGGCTCTAGATGACTTTCCGACTCCTG 946
Query 1132 TTGATCCCCAAAAGTAAAAGACTTCCGTTTTAAA 1165
| |||||| |||| ||||||||||||||||
Sbjct 945 GTTCTCCCCAGTAGTATTAGACTTCCGTTTTAAA 912
>seq16718
Length=10213
Score = 104 bits (114), Expect = 3e-19
Identities = 103/132 (78%), Gaps = 1/132 (1%)
Strand=Plus/Plus
Query 924 TTTTC-ATATCCTCCTTTGACAGGGACTCTGTAAGGATATCTGTCGCAGATCTTGAGAAG 982
||||| | |||||||||||| || |||||||| ||||||| || || | || |||||
Sbjct 9083 TTTTCTAAATCCTCCTTTGATGGGAACTCTGTATGGATATCGATCACATACTTTAAGAAG 9142
Query 983 CTCGTCGTATTTGATCCATCCGTAGAAGTCATCGATAACAACGCAGGGTTGTCCGGTGTA 1042
|||||||||| |||||||||||||||||| || |||| ||| ||||| |||
Sbjct 9143 CTCGTCGTATGCGATCCATCCGTAGAAGTCGTCAATAATGACGTTTGGTTGATATTCGTA 9202
Query 1043 TCCATCCCACCA 1054
||| ||||||||
Sbjct 9203 TCCGTCCCACCA 9214
>seq55868
Length=5588
Score = 77.0 bits (84), Expect = 4e-11
Identities = 90/122 (74%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 897 GTGATCCATATATATTTAGATACGAAGTTTTCATATCCTCCTTTGACAGGGACTCTGTAA 956
|| ||||| || | |||| || || ||| | | |||||||||| ||| |||| ||
Sbjct 1597 GTAATCCAGATCCGTCTAGACACAAACTTTCGAAAGCCTCCTTTGATAGGCACTCGATAG 1656
Query 957 GGATATCTGTCGCAGATCTTGAGAAGCTCGTCGTATTTGATCCATCCGTAGAAGTCATCG 1016
|| |||| || || || || ||||| ||||| | | ||||||||||| |||||||||
Sbjct 1657 GGGTATCGATCACATATTTTAAGAAGTTCGTCATGTGGTATCCATCCGTAAAAGTCATCG 1716
Query 1017 AT 1018
||
Sbjct 1717 AT 1718
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 5829168919416
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |