Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014- 09-26] 482,396 sequences; 1,258,717,181 total letters Query= NC_025476.1 Length=1865 Score E Sequences producing significant alignments: (Bits) Value seq251874 122 1e-24 seq192907 120 4e-24 seq16718 104 3e-19 seq55868 77.0 4e-11 >seq251874 Length=1306 Score = 122 bits (134), Expect = 1e-24 Identities = 202/286 (71%), Gaps = 7/286 (2%) Strand=Plus/Minus Query 896 TGTGATCCATATATATTTAGATACGAAGTTTTCATATCCTCCTTTGACAGGGACTCTGTA 955 ||| |||||||| || || || || ||| | |||| ||||||| || |||||||| Sbjct 679 TGTAATCCATATTCTCTTTGAAACAAATTTTCTAAATCCGCCTTTGATGGGCACTCTGTA 620 Query 956 AGGATATCTGTCGCAGATCTTGAGAAGCTCGTCGTATTTGATCCATCCGTAGAAGTCATC 1015 |||||||| || || || || |||||||||||||| |||||||||||||||||| || Sbjct 619 TGGATATCTATCACATATTTTAAGAAGCTCGTCGTAGGCGATCCATCCGTAGAAGTCGTC 560 Query 1016 GATAACAACGCAGGGTTGTCCGGTGTATCCATCCCACCATTCTCCGCGCGGCTTGTAGTA 1075 || | ||| |||||| | ||||| |||||||| ||| || | || || | Sbjct 559 AATGATGACGTTGGGTTGGAAGTCATATCCGTCCCACCAAGGTCCTCGTTGTTTATAAAA 500 Query 1076 G---GTTTCACCGAGAGC-GCGGCTTTCCTCGCGCGCTTTACGGGACTTTCC-AGTTCCA 1130 | | |||||||| ||| | || ||| ||| | ||| || |||||||| | || Sbjct 499 GATAGGTTCACCGACAGCAGAAGC-TTCTTCGAGGGCTCGTCGAGACTTTCCTACACCCG 441 Query 1131 GTTGATCCCCAAAAGTAAAAGACTTCCGTTTTAAAGTCTCGTTCTT 1176 |||| || || ||||| | || || ||||| || | || |||| Sbjct 440 GTTG-GCCGTAATAGTAATATACCTCAGTTTTGAAATAGCGGTCTT 396 >seq192907 Length=1861 Score = 120 bits (132), Expect = 4e-24 Identities = 193/274 (70%), Gaps = 5/274 (2%) Strand=Plus/Minus Query 896 TGTGATCCATATATATTTAGATACGAAGTTTTCATATCCTCCTTTGACAGGGACTCTGTA 955 ||| |||||||| | || || || ||| | |||||||||||| || || | ||| Sbjct 1184 TGTAATCCATATTCGTAGTGAAACAAATTTTCTAAATCCTCCTTTGATGGGTACGCGGTA 1125 Query 956 AGGATATCTGTCGCAGATCTTGAGAAGCTCGTCGTATTTGATCCATCCGTAGAAGTCATC 1015 ||||||||| ||||| || |||||||||||||| ||| ||||||||||||||| || || Sbjct 1124 AGGATATCTATCGCATATTTTGAGAAGCTCGTCATATGCGATCCATCCGTAGAAATCGTC 1065 Query 1016 GATAACAACGCAGGGTTGTCCGGTGTATCCATCCCACCATTCTCCGCGCGGCTTGTAGTA 1075 ||| | || ||||| |||||| |||||||||| | | || | || ||| | Sbjct 1064 GATGATGACATTTGGTTGGTATTCGTATCCGTCCCACCATTTTTCTCGTTGTTTATAGAA 1005 Query 1076 G---GTTTCACCGAGAGC-GCGGCTTTCCTCGCGCGCTTTACGGGACTTTCCAGTTCCAG 1131 | | | ||||| ||| | || || | ||| || |||||||| ||| | Sbjct 1004 GATAGGTCCACCGTAAGCAGTAGC-CTCTGCCAAGGCTCTAGATGACTTTCCGACTCCTG 946 Query 1132 TTGATCCCCAAAAGTAAAAGACTTCCGTTTTAAA 1165 | |||||| |||| |||||||||||||||| Sbjct 945 GTTCTCCCCAGTAGTATTAGACTTCCGTTTTAAA 912 >seq16718 Length=10213 Score = 104 bits (114), Expect = 3e-19 Identities = 103/132 (78%), Gaps = 1/132 (1%) Strand=Plus/Plus Query 924 TTTTC-ATATCCTCCTTTGACAGGGACTCTGTAAGGATATCTGTCGCAGATCTTGAGAAG 982 ||||| | |||||||||||| || |||||||| ||||||| || || | || ||||| Sbjct 9083 TTTTCTAAATCCTCCTTTGATGGGAACTCTGTATGGATATCGATCACATACTTTAAGAAG 9142 Query 983 CTCGTCGTATTTGATCCATCCGTAGAAGTCATCGATAACAACGCAGGGTTGTCCGGTGTA 1042 |||||||||| |||||||||||||||||| || |||| ||| ||||| ||| Sbjct 9143 CTCGTCGTATGCGATCCATCCGTAGAAGTCGTCAATAATGACGTTTGGTTGATATTCGTA 9202 Query 1043 TCCATCCCACCA 1054 ||| |||||||| Sbjct 9203 TCCGTCCCACCA 9214 >seq55868 Length=5588 Score = 77.0 bits (84), Expect = 4e-11 Identities = 90/122 (74%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 897 GTGATCCATATATATTTAGATACGAAGTTTTCATATCCTCCTTTGACAGGGACTCTGTAA 956 || ||||| || | |||| || || ||| | | |||||||||| ||| |||| || Sbjct 1597 GTAATCCAGATCCGTCTAGACACAAACTTTCGAAAGCCTCCTTTGATAGGCACTCGATAG 1656 Query 957 GGATATCTGTCGCAGATCTTGAGAAGCTCGTCGTATTTGATCCATCCGTAGAAGTCATCG 1016 || |||| || || || || ||||| ||||| | | ||||||||||| ||||||||| Sbjct 1657 GGGTATCGATCACATATTTTAAGAAGTTCGTCATGTGGTATCCATCCGTAAAAGTCATCG 1716 Query 1017 AT 1018 || Sbjct 1717 AT 1718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5829168919416