Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014-
09-26] 482,396 sequences; 1,258,717,181 total letters
Query= NC_025792.1
Length=1790
Score E
Sequences producing significant alignments: (Bits) Value
seq192907 91.5 2e-15
seq16718 89.7 6e-15
seq251874 86.0 7e-14
seq55868 84.2 2e-13
>seq192907
Length=1861
Score = 91.5 bits (100), Expect = 2e-15
Identities = 94/122 (77%), Gaps = 1/122 (1%)
Strand=Plus/Minus
Query 999 cccccTTT-ATTTGTACTTTGTAAGGGTATCTGTCAGTAATTTTGAGTAGTTCGTCGTAT 1057
|| ||||| || |||| |||||| ||||| || |||||||| || ||||| |||
Sbjct 1147 CCTCCTTTGATGGGTACGCGGTAAGGATATCTATCGCATATTTTGAGAAGCTCGTCATAT 1088
Query 1058 TTGATCCACCCGTAGAAGTCGTCGATGATGACGTTCTCTTGTTGCTTGTATCCGTCCCAC 1117
|||||| |||||||| |||||||||||||| || ||| | | |||||||||||||
Sbjct 1087 GCGATCCATCCGTAGAAATCGTCGATGATGACATTTGGTTGGTATTCGTATCCGTCCCAC 1028
Query 1118 CA 1119
||
Sbjct 1027 CA 1026
>seq16718
Length=10213
Score = 89.7 bits (98), Expect = 6e-15
Identities = 105/141 (74%), Gaps = 1/141 (1%)
Strand=Plus/Plus
Query 999 cccccTTT-ATTTGTACTTTGTAAGGGTATCTGTCAGTAATTTTGAGTAGTTCGTCGTAT 1057
|| ||||| || | ||| |||| || |||| ||| | ||| || || |||||||||
Sbjct 9093 CCTCCTTTGATGGGAACTCTGTATGGATATCGATCACATACTTTAAGAAGCTCGTCGTAT 9152
Query 1058 TTGATCCACCCGTAGAAGTCGTCGATGATGACGTTCTCTTGTTGCTTGTATCCGTCCCAC 1117
|||||| |||||||||||||| || |||||||| ||| | | |||||||||||||
Sbjct 9153 GCGATCCATCCGTAGAAGTCGTCAATAATGACGTTTGGTTGATATTCGTATCCGTCCCAC 9212
Query 1118 CACAAGCCCCTTGGCTTGTAG 1138
||| | ||| | ||||||
Sbjct 9213 CACTTTTCTCTTTGTTTGTAG 9233
>seq251874
Length=1306
Score = 86.0 bits (94), Expect = 7e-14
Identities = 93/122 (76%), Gaps = 1/122 (1%)
Strand=Plus/Minus
Query 999 cccccTTT-ATTTGTACTTTGTAAGGGTATCTGTCAGTAATTTTGAGTAGTTCGTCGTAT 1057
|| ||||| || | ||| |||| || ||||| ||| ||||| || || ||||||||
Sbjct 642 CCGCCTTTGATGGGCACTCTGTATGGATATCTATCACATATTTTAAGAAGCTCGTCGTAG 583
Query 1058 TTGATCCACCCGTAGAAGTCGTCGATGATGACGTTCTCTTGTTGCTTGTATCCGTCCCAC 1117
|||||| |||||||||||||| ||||||||||| ||| | ||||||||||||
Sbjct 582 GCGATCCATCCGTAGAAGTCGTCAATGATGACGTTGGGTTGGAAGTCATATCCGTCCCAC 523
Query 1118 CA 1119
||
Sbjct 522 CA 521
>seq55868
Length=5588
Score = 84.2 bits (92), Expect = 2e-13
Identities = 111/153 (73%), Gaps = 1/153 (1%)
Strand=Plus/Plus
Query 992 TCGAAcccccccTTT-ATTTGTACTTTGTAAGGGTATCTGTCAGTAATTTTGAGTAGTTC 1050
||||| || ||||| || | ||| || ||||||| ||| ||||| || |||||
Sbjct 1626 TCGAAAGCCTCCTTTGATAGGCACTCGATAGGGGTATCGATCACATATTTTAAGAAGTTC 1685
Query 1051 GTCGTATTTGATCCACCCGTAGAAGTCGTCGATGATGACGTTCTCTTGTTGCTTGTATCC 1110
||| | | ||||| ||||| ||||| |||||||||| ||| ||||| | | |||||
Sbjct 1686 GTCATGTGGTATCCATCCGTAAAAGTCATCGATGATGATGTTGTCTTGGTATTCATATCC 1745
Query 1111 GTCCCACCACAAGCCCCTTGGCTTGTAGTAGAT 1143
||||||||| | | ||| | || ||| ||||
Sbjct 1746 GTCCCACCATTTGTCTCTTTGTTTATAGAAGAT 1778
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 5590399029216
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |