Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014- 09-26] 482,396 sequences; 1,258,717,181 total letters Query= NC_025792.1 Length=1790 Score E Sequences producing significant alignments: (Bits) Value seq192907 91.5 2e-15 seq16718 89.7 6e-15 seq251874 86.0 7e-14 seq55868 84.2 2e-13 >seq192907 Length=1861 Score = 91.5 bits (100), Expect = 2e-15 Identities = 94/122 (77%), Gaps = 1/122 (1%) Strand=Plus/Minus Query 999 cccccTTT-ATTTGTACTTTGTAAGGGTATCTGTCAGTAATTTTGAGTAGTTCGTCGTAT 1057 || ||||| || |||| |||||| ||||| || |||||||| || ||||| ||| Sbjct 1147 CCTCCTTTGATGGGTACGCGGTAAGGATATCTATCGCATATTTTGAGAAGCTCGTCATAT 1088 Query 1058 TTGATCCACCCGTAGAAGTCGTCGATGATGACGTTCTCTTGTTGCTTGTATCCGTCCCAC 1117 |||||| |||||||| |||||||||||||| || ||| | | ||||||||||||| Sbjct 1087 GCGATCCATCCGTAGAAATCGTCGATGATGACATTTGGTTGGTATTCGTATCCGTCCCAC 1028 Query 1118 CA 1119 || Sbjct 1027 CA 1026 >seq16718 Length=10213 Score = 89.7 bits (98), Expect = 6e-15 Identities = 105/141 (74%), Gaps = 1/141 (1%) Strand=Plus/Plus Query 999 cccccTTT-ATTTGTACTTTGTAAGGGTATCTGTCAGTAATTTTGAGTAGTTCGTCGTAT 1057 || ||||| || | ||| |||| || |||| ||| | ||| || || ||||||||| Sbjct 9093 CCTCCTTTGATGGGAACTCTGTATGGATATCGATCACATACTTTAAGAAGCTCGTCGTAT 9152 Query 1058 TTGATCCACCCGTAGAAGTCGTCGATGATGACGTTCTCTTGTTGCTTGTATCCGTCCCAC 1117 |||||| |||||||||||||| || |||||||| ||| | | ||||||||||||| Sbjct 9153 GCGATCCATCCGTAGAAGTCGTCAATAATGACGTTTGGTTGATATTCGTATCCGTCCCAC 9212 Query 1118 CACAAGCCCCTTGGCTTGTAG 1138 ||| | ||| | |||||| Sbjct 9213 CACTTTTCTCTTTGTTTGTAG 9233 >seq251874 Length=1306 Score = 86.0 bits (94), Expect = 7e-14 Identities = 93/122 (76%), Gaps = 1/122 (1%) Strand=Plus/Minus Query 999 cccccTTT-ATTTGTACTTTGTAAGGGTATCTGTCAGTAATTTTGAGTAGTTCGTCGTAT 1057 || ||||| || | ||| |||| || ||||| ||| ||||| || || |||||||| Sbjct 642 CCGCCTTTGATGGGCACTCTGTATGGATATCTATCACATATTTTAAGAAGCTCGTCGTAG 583 Query 1058 TTGATCCACCCGTAGAAGTCGTCGATGATGACGTTCTCTTGTTGCTTGTATCCGTCCCAC 1117 |||||| |||||||||||||| ||||||||||| ||| | |||||||||||| Sbjct 582 GCGATCCATCCGTAGAAGTCGTCAATGATGACGTTGGGTTGGAAGTCATATCCGTCCCAC 523 Query 1118 CA 1119 || Sbjct 522 CA 521 >seq55868 Length=5588 Score = 84.2 bits (92), Expect = 2e-13 Identities = 111/153 (73%), Gaps = 1/153 (1%) Strand=Plus/Plus Query 992 TCGAAcccccccTTT-ATTTGTACTTTGTAAGGGTATCTGTCAGTAATTTTGAGTAGTTC 1050 ||||| || ||||| || | ||| || ||||||| ||| ||||| || ||||| Sbjct 1626 TCGAAAGCCTCCTTTGATAGGCACTCGATAGGGGTATCGATCACATATTTTAAGAAGTTC 1685 Query 1051 GTCGTATTTGATCCACCCGTAGAAGTCGTCGATGATGACGTTCTCTTGTTGCTTGTATCC 1110 ||| | | ||||| ||||| ||||| |||||||||| ||| ||||| | | ||||| Sbjct 1686 GTCATGTGGTATCCATCCGTAAAAGTCATCGATGATGATGTTGTCTTGGTATTCATATCC 1745 Query 1111 GTCCCACCACAAGCCCCTTGGCTTGTAGTAGAT 1143 ||||||||| | | ||| | || ||| |||| Sbjct 1746 GTCCCACCATTTGTCTCTTTGTTTATAGAAGAT 1778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5590399029216