Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014- 09-26] 482,396 sequences; 1,258,717,181 total letters Query= NC_027530.1 Length=1789 Score E Sequences producing significant alignments: (Bits) Value seq32853 96.9 4e-17 seq16718 82.4 9e-13 seq251874 77.0 4e-11 seq55868 77.0 4e-11 >seq32853 Length=7534 Score = 96.9 bits (106), Expect = 4e-17 Identities = 180/254 (71%), Gaps = 13/254 (5%) Strand=Plus/Plus Query 887 AACCCTCCTTTAATCTGAACTTTATACGGATAACGATC-CATAATTTTAAGCATTTCATC 945 || ||||||||||| | ||| ||| || || ||||| ||| |||||||| | ||| | Sbjct 6376 AAGCCTCCTTTAATAGGCACTCGATAGGGGTATCGATCACAT-ATTTTAAGAAGTTCGCC 6434 Query 946 ATACTTTATCCATCCATAGAAATCATCTATGATGACGCATGTTTGCTGA---GCGTAGCC 1002 ||| ||||||||| || || ||||| ||||| | ||| | | |||| ||||||| Sbjct 6435 ATATGGTATCCATCCGTAAAAGTCATCGATGATAA--CAT-TGTCCTGATATTCGTAGCC 6491 Query 1003 GTCCCACCAGAGACCTCTAGGTTTGTAGTAAATGGAATCCAGCCCTCTGATT-TTAGCTT 1061 |||||||| ||| | || ||| |||||| ||||| || | ||| |||||| Sbjct 6492 ATCCCACCACTTGTCTCGTTGCTTATAGAAAATGG-ATCCA-CCGAC--ATTAGTAGCTT 6547 Query 1062 CTTCCAAGGCTGTCCTAGATTTGCCAGTCCCCGGTTCTCCGTAGTAGTAGAAGACCTCAG 1121 |||||| |||| | || || || || || ||| | || | || | ||| ||||| | Sbjct 6548 CTTCCAGGGCTCTTCTTGACTTTCCTACACCTGGTGCCCCATGATAATGGAATACCTCTG 6607 Query 1122 TTTTGAAGTCTCTA 1135 ||||||| | |||| Sbjct 6608 TTTTGAAATATCTA 6621 >seq16718 Length=10213 Score = 82.4 bits (90), Expect = 9e-13 Identities = 111/152 (73%), Gaps = 2/152 (1%) Strand=Plus/Plus Query 887 AACCCTCCTTTAATCTGAACTTTATACGGATAACGATC-CATAATTTTAAGCATTTCATC 945 || |||||||| || ||||| | || ||||| ||||| |||| ||| ||| | || || Sbjct 9090 AATCCTCCTTTGATGGGAACTCTGTATGGATATCGATCACATACTTT-AAGAAGCTCGTC 9148 Query 946 ATACTTTATCCATCCATAGAAATCATCTATGATGACGCATGTTTGCTGAGCGTAGCCGTC 1005 || |||||||| ||||| || || || |||||| || ||| | |||| ||||| Sbjct 9149 GTATGCGATCCATCCGTAGAAGTCGTCAATAATGACGTTTGGTTGATATTCGTATCCGTC 9208 Query 1006 CCACCAGAGACCTCTAGGTTTGTAGTAAATGG 1037 |||||| |||| |||||||| |||||| Sbjct 9209 CCACCACTTTTCTCTTTGTTTGTAGAAAATGG 9240 >seq251874 Length=1306 Score = 77.0 bits (84), Expect = 4e-11 Identities = 166/244 (68%), Gaps = 7/244 (3%) Strand=Plus/Minus Query 887 AACCCTCCTTTAATCTGAACTTTATACGGATAACGATC-CATAATTTTAAGCATTTCATC 945 || || ||||| || | ||| | || ||||| | ||| |||| ||||||| | || || Sbjct 645 AATCCGCCTTTGATGGGCACTCTGTATGGATATCTATCACATA-TTTTAAGAAGCTCGTC 587 Query 946 ATACTTTATCCATCCATAGAAATCATCTATGATGACGCATGTTTGCTGAGCGTAGCCGTC 1005 || |||||||| ||||| || || ||||||||| | ||| | || ||||| Sbjct 586 GTAGGCGATCCATCCGTAGAAGTCGTCAATGATGACGTTGGGTTGGAAGTCATATCCGTC 527 Query 1006 CCACCAGAGACCTCTAGGTTTGTAGTAAATGGAATC-CAGCCCTCTGATTTTAGCTTCTT 1064 |||||| | |||| |||| || | || | || | | | | || |||||||| Sbjct 526 CCACCAAGGTCCTCGTTGTTTATAAAAGATAGGTTCACCGACAGCAGA----AGCTTCTT 471 Query 1065 CCAAGGCTGTCCTAGATTTGCCAGTCCCCGGTTCTCCGTAGTAGTAGAAGACCTCAGTTT 1124 | | |||| | ||| || || ||||||| ||||| ||||| | |||||||||| Sbjct 470 CGAGGGCTCGTCGAGACTTTCCTACACCCGGTTGGCCGTAATAGTAATATACCTCAGTTT 411 Query 1125 TGAA 1128 |||| Sbjct 410 TGAA 407 >seq55868 Length=5588 Score = 77.0 bits (84), Expect = 4e-11 Identities = 172/251 (69%), Gaps = 7/251 (3%) Strand=Plus/Plus Query 887 AACCCTCCTTTAATCTGAACTTTATACGGATAACGATC-CATAATTTTAAGCATTTCATC 945 || |||||||| || | ||| ||| || || ||||| |||| ||||||| | ||| || Sbjct 1630 AAGCCTCCTTTGATAGGCACTCGATAGGGGTATCGATCACATA-TTTTAAGAAGTTCGTC 1688 Query 946 ATACTTTATCCATCCATAGAAATCATCTATGATGACGCATGT-TTGCTGAGCGTAGCCGT 1004 || ||||||||| || || ||||| ||||||| | ||| ||| | | || |||| Sbjct 1689 ATGTGGTATCCATCCGTAAAAGTCATCGATGATGATGT-TGTCTTGGTATTCATATCCGT 1747 Query 1005 CCCACCAGAGACCTCTAGGTTTGTAGTAAATGGAATCCAGCCCTCTGATTTTAGCTTCTT 1064 ||||||| |||| |||| ||| | |||| |||| || | ||||||| Sbjct 1748 CCCACCATTTGTCTCTTTGTTTATAGAAGATGG-GTCCA--CCGATAGCAGTAGCTTCAG 1804 Query 1065 CCAAGGCTGTCCTAGATTTGCCAGTCCCCGGTTCTCCGTAGTAGTAGAAGACCTCAGTTT 1124 |||||||| ||||| || || ||| | || | || ||||| |||| |||| Sbjct 1805 CCAAGGCTCGGGATGATTTCCCTACACCTGGTGCCCCATGATAATAGAATACCTGTGTTT 1864 Query 1125 TGAAGTCTCTA 1135 |||| | |||| Sbjct 1865 TGAAATATCTA 1875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5587215430680