Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014-
09-26] 482,396 sequences; 1,258,717,181 total letters
Query= NC_027530.1
Length=1789
Score E
Sequences producing significant alignments: (Bits) Value
seq32853 96.9 4e-17
seq16718 82.4 9e-13
seq251874 77.0 4e-11
seq55868 77.0 4e-11
>seq32853
Length=7534
Score = 96.9 bits (106), Expect = 4e-17
Identities = 180/254 (71%), Gaps = 13/254 (5%)
Strand=Plus/Plus
Query 887 AACCCTCCTTTAATCTGAACTTTATACGGATAACGATC-CATAATTTTAAGCATTTCATC 945
|| ||||||||||| | ||| ||| || || ||||| ||| |||||||| | ||| |
Sbjct 6376 AAGCCTCCTTTAATAGGCACTCGATAGGGGTATCGATCACAT-ATTTTAAGAAGTTCGCC 6434
Query 946 ATACTTTATCCATCCATAGAAATCATCTATGATGACGCATGTTTGCTGA---GCGTAGCC 1002
||| ||||||||| || || ||||| ||||| | ||| | | |||| |||||||
Sbjct 6435 ATATGGTATCCATCCGTAAAAGTCATCGATGATAA--CAT-TGTCCTGATATTCGTAGCC 6491
Query 1003 GTCCCACCAGAGACCTCTAGGTTTGTAGTAAATGGAATCCAGCCCTCTGATT-TTAGCTT 1061
|||||||| ||| | || ||| |||||| ||||| || | ||| ||||||
Sbjct 6492 ATCCCACCACTTGTCTCGTTGCTTATAGAAAATGG-ATCCA-CCGAC--ATTAGTAGCTT 6547
Query 1062 CTTCCAAGGCTGTCCTAGATTTGCCAGTCCCCGGTTCTCCGTAGTAGTAGAAGACCTCAG 1121
|||||| |||| | || || || || || ||| | || | || | ||| ||||| |
Sbjct 6548 CTTCCAGGGCTCTTCTTGACTTTCCTACACCTGGTGCCCCATGATAATGGAATACCTCTG 6607
Query 1122 TTTTGAAGTCTCTA 1135
||||||| | ||||
Sbjct 6608 TTTTGAAATATCTA 6621
>seq16718
Length=10213
Score = 82.4 bits (90), Expect = 9e-13
Identities = 111/152 (73%), Gaps = 2/152 (1%)
Strand=Plus/Plus
Query 887 AACCCTCCTTTAATCTGAACTTTATACGGATAACGATC-CATAATTTTAAGCATTTCATC 945
|| |||||||| || ||||| | || ||||| ||||| |||| ||| ||| | || ||
Sbjct 9090 AATCCTCCTTTGATGGGAACTCTGTATGGATATCGATCACATACTTT-AAGAAGCTCGTC 9148
Query 946 ATACTTTATCCATCCATAGAAATCATCTATGATGACGCATGTTTGCTGAGCGTAGCCGTC 1005
|| |||||||| ||||| || || || |||||| || ||| | |||| |||||
Sbjct 9149 GTATGCGATCCATCCGTAGAAGTCGTCAATAATGACGTTTGGTTGATATTCGTATCCGTC 9208
Query 1006 CCACCAGAGACCTCTAGGTTTGTAGTAAATGG 1037
|||||| |||| |||||||| ||||||
Sbjct 9209 CCACCACTTTTCTCTTTGTTTGTAGAAAATGG 9240
>seq251874
Length=1306
Score = 77.0 bits (84), Expect = 4e-11
Identities = 166/244 (68%), Gaps = 7/244 (3%)
Strand=Plus/Minus
Query 887 AACCCTCCTTTAATCTGAACTTTATACGGATAACGATC-CATAATTTTAAGCATTTCATC 945
|| || ||||| || | ||| | || ||||| | ||| |||| ||||||| | || ||
Sbjct 645 AATCCGCCTTTGATGGGCACTCTGTATGGATATCTATCACATA-TTTTAAGAAGCTCGTC 587
Query 946 ATACTTTATCCATCCATAGAAATCATCTATGATGACGCATGTTTGCTGAGCGTAGCCGTC 1005
|| |||||||| ||||| || || ||||||||| | ||| | || |||||
Sbjct 586 GTAGGCGATCCATCCGTAGAAGTCGTCAATGATGACGTTGGGTTGGAAGTCATATCCGTC 527
Query 1006 CCACCAGAGACCTCTAGGTTTGTAGTAAATGGAATC-CAGCCCTCTGATTTTAGCTTCTT 1064
|||||| | |||| |||| || | || | || | | | | || ||||||||
Sbjct 526 CCACCAAGGTCCTCGTTGTTTATAAAAGATAGGTTCACCGACAGCAGA----AGCTTCTT 471
Query 1065 CCAAGGCTGTCCTAGATTTGCCAGTCCCCGGTTCTCCGTAGTAGTAGAAGACCTCAGTTT 1124
| | |||| | ||| || || ||||||| ||||| ||||| | ||||||||||
Sbjct 470 CGAGGGCTCGTCGAGACTTTCCTACACCCGGTTGGCCGTAATAGTAATATACCTCAGTTT 411
Query 1125 TGAA 1128
||||
Sbjct 410 TGAA 407
>seq55868
Length=5588
Score = 77.0 bits (84), Expect = 4e-11
Identities = 172/251 (69%), Gaps = 7/251 (3%)
Strand=Plus/Plus
Query 887 AACCCTCCTTTAATCTGAACTTTATACGGATAACGATC-CATAATTTTAAGCATTTCATC 945
|| |||||||| || | ||| ||| || || ||||| |||| ||||||| | ||| ||
Sbjct 1630 AAGCCTCCTTTGATAGGCACTCGATAGGGGTATCGATCACATA-TTTTAAGAAGTTCGTC 1688
Query 946 ATACTTTATCCATCCATAGAAATCATCTATGATGACGCATGT-TTGCTGAGCGTAGCCGT 1004
|| ||||||||| || || ||||| ||||||| | ||| ||| | | || ||||
Sbjct 1689 ATGTGGTATCCATCCGTAAAAGTCATCGATGATGATGT-TGTCTTGGTATTCATATCCGT 1747
Query 1005 CCCACCAGAGACCTCTAGGTTTGTAGTAAATGGAATCCAGCCCTCTGATTTTAGCTTCTT 1064
||||||| |||| |||| ||| | |||| |||| || | |||||||
Sbjct 1748 CCCACCATTTGTCTCTTTGTTTATAGAAGATGG-GTCCA--CCGATAGCAGTAGCTTCAG 1804
Query 1065 CCAAGGCTGTCCTAGATTTGCCAGTCCCCGGTTCTCCGTAGTAGTAGAAGACCTCAGTTT 1124
|||||||| ||||| || || ||| | || | || ||||| |||| ||||
Sbjct 1805 CCAAGGCTCGGGATGATTTCCCTACACCTGGTGCCCCATGATAATAGAATACCTGTGTTT 1864
Query 1125 TGAAGTCTCTA 1135
|||| | ||||
Sbjct 1865 TGAAATATCTA 1875
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 5587215430680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |