Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014- 09-26] 482,396 sequences; 1,258,717,181 total letters Query= NC_032682.1 Length=1724 Score E Sequences producing significant alignments: (Bits) Value seq192907 107 2e-20 seq32853 100 3e-18 seq16718 77.0 3e-11 >seq192907 Length=1861 Score = 107 bits (118), Expect = 2e-20 Identities = 112/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 960 CCTTTGACAGGTACTCGGTAGGGATATCTGTCGGTTATTTTTAGTAGTTCGTCAAGTTCA 1019 ||||||| ||||| ||||| |||||||| ||| |||||| || || |||||| | | Sbjct 1144 CCTTTGATGGGTACGCGGTAAGGATATCTATCGCATATTTTGAGAAGCTCGTCATATGCG 1085 Query 1020 AGCCATCCGTAGAAATCATCGATAATAACATTTTCTTGTTGTTTGTAGCCATCCCACCAG 1079 | ||||||||||||||| ||||| || |||||| ||| | || ||| || |||||||| Sbjct 1084 ATCCATCCGTAGAAATCGTCGATGATGACATTTGGTTGGTATTCGTATCCGTCCCACCAT 1025 Query 1080 TTACCACGAGCCTTGTAGAAAATAGGT 1106 || | || || ||||| |||||| Sbjct 1024 TTTTCTCGTTGTTTATAGAAGATAGGT 998 >seq32853 Length=7534 Score = 100 bits (110), Expect = 3e-18 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 960 CCTTTGACAGGTACTCGGTAGGGATATCTGTCGGTTATTTTTAGTAGTTCGTCAAGTTCA 1019 ||||| | ||| ||||| ||||| |||| || |||||| || |||||| || | Sbjct 6382 CCTTTAATAGGCACTCGATAGGGGTATCGATCACATATTTTAAGAAGTTCGCCATATGGT 6441 Query 1020 AGCCATCCGTAGAAATCATCGATAATAACATTTTCTTGTTGTTTGTAGCCATCCCACCAG 1079 | ||||||||| || |||||||| |||||||| || || | || ||||||||||||||| Sbjct 6442 ATCCATCCGTAAAAGTCATCGATGATAACATTGTCCTGATATTCGTAGCCATCCCACCAC 6501 Query 1080 TTACCACGAGCCTTGTAGAAAAT 1102 || | || ||| |||||||| Sbjct 6502 TTGTCTCGTTGCTTATAGAAAAT 6524 >seq16718 Length=10213 Score = 77.0 bits (84), Expect = 3e-11 Identities = 105/147 (71%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 960 CCTTTGACAGGTACTCGGTAGGGATATCTGTCGGTTATTTTTAGTAGTTCGTCAAGTTCA 1019 ||||||| || |||| ||| ||||||| || || ||| || || ||||| | | Sbjct 9096 CCTTTGATGGGAACTCTGTATGGATATCGATCACATACTTTAAGAAGCTCGTCGTATGCG 9155 Query 1020 AGCCATCCGTAGAAATCATCGATAATAACATTTTCTTGTTGTTTGTAGCCATCCCACCAG 1079 | |||||||||||| || || ||||| || ||| ||| | || ||| || |||||||| Sbjct 9156 ATCCATCCGTAGAAGTCGTCAATAATGACGTTTGGTTGATATTCGTATCCGTCCCACCAC 9215 Query 1080 TTACCACGAGCCTTGTAGAAAATAGGT 1106 || | | ||||||||||| ||| Sbjct 9216 TTTTCTCTTTGTTTGTAGAAAATGGGT 9242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5380281525840