Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20saginata_20[genbank_20GCA_5F001693075.2_202016-10-23] 3,626 sequences; 169,104,283 total letters Query= NC_024700.1 Length=1773 Score E Sequences producing significant alignments: (Bits) Value seq35 183 3e-43 seq22 87.8 2e-14 >seq35 Length=970225 Score = 183 bits (202), Expect = 3e-43 Identities = 257/357 (72%), Gaps = 9/357 (3%) Strand=Plus/Plus Query 201 AATACATATTGAAATTGCACGAGGTGATGACTACCAAAACAAAGACTACTGCACGAAAAC 260 ||| ||||||||||||||| |||||||| || || |||||||| || || | ||| Sbjct 648207 AATGCATATTGAAATTGCAAAGGGTGATGATTATCAGAACAAAGAATATTGTTCAAAAGG 648266 Query 261 CGACAAAGAAGCATGGACATGGGGAGTACCAATTAAACAAGGACAATGCACAGATCTTAA 320 || | | ||||| || |||| ||||| || ||||||||| ||| ||||| || Sbjct 648267 AGATATTAACCCATGGCAATTTGGAGAACCAACAAAGCAAGGACAACGCAATGATCTGAA 648326 Query 321 AAGAGCATGCAAGGCTATAAAAGAAGGAAAAAGTATGAAATATATATGCGAAAACTTCGA 380 ||||| ||| | | ||||| | | |||| |||||||||| | ||||| ||| ||| || Sbjct 648327 AAGAGTATGTGAAGATATAAGAAAGGGAAGAAGTATGAAACAAATATGTGAAGACTATGA 648386 Query 381 CGATATTTATGTTAGATATTGGAGAGGTCTGTACAAG---CTTAAAGAAACGCTTGCTCC 437 ||||| |||||||||| |||||||| | || | || | ||| ||| || | Sbjct 648387 TGATATATATGTTAGATGTTGGAGAGATTTGCATGAGTACCAAAAACAAA---TTAAATC 648443 Query 438 GCCACCAGAAAGAGATTTTCCAACAGAAGTTTATTACTACTATGGTGAACCAGGTGTG-- 495 ||| || || |||||||| ||||| || ||||||| | ||||| |||| |||| Sbjct 648444 GCCTCCTGAGGGAGATTTTAAGACAGAGGTATATTACTGCCATGGTCCGCCAGATGTGAA 648503 Query 496 GGAAAATCACGTAGAGCTTATTCAGAAGCCAAAGCTACAAATGAATCAATTTACTAC 552 ||||||||| ||||||| | |||||| || || ||| ||| |||| |||||| Sbjct 648504 AAAAAATCACGAAGAGCTT-TGAAGAAGCAAATGCAACAGGAGAACCAATATACTAC 648559 Score = 132 bits (146), Expect = 5e-28 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 201 AATACATATTGAAATTGCACGAGGTGATGACTACCAAAACAAAGACTACTGCACGAAAAC 260 ||| ||| ||||||||||| ||||||| || || |||||||| || || | ||| Sbjct 648940 AATGCATTTTGAAATTGCAAAGGGTGATGTTTATCAGAACAAAGAATATTGTTCAAAAGG 648881 Query 261 CGACAAAGAAGCATGGACATGGGGAGTACCAATTAAACAAGGACAATGCACAGATCTTAA 320 || | | ||||| || |||| ||||| || ||||||||| ||| ||||| || Sbjct 648880 AGATATTAACCCATGGCAATTTGGAGAACCAACAAAGCAAGGACAACGCAATGATCTGAA 648821 Query 321 AAGAGCATGCAAGGCTATAAAAGAAGGAAAAAGTATGAAATATATATGCGAAAACTTCGA 380 ||||| ||| | | ||||| | | |||| |||||||||| | ||||| ||| ||| || Sbjct 648820 AAGAGTATGTGAAGATATAAGAAAGGGAAGAAGTATGAAACAAATATGTGAAGACTATGA 648761 Query 381 CGATATTTATGTTAGATATTGGAGAG 406 ||||| |||||||||| |||||||| Sbjct 648760 TGATATATATGTTAGATGTTGGAGAG 648735 >seq22 Length=1285516 Score = 87.8 bits (96), Expect = 2e-14 Identities = 114/155 (74%), Gaps = 2/155 (1%) Strand=Plus/Plus Query 519 AGAAGC-CAAAGCTACAAATGAATCAATTTACTACAAACCCAGAGGAGATTGGTGGGATG 577 |||||| ||||| | |||||| || | || ||||| |||||||| |||| ||| | Sbjct 723365 AGAAGCACAAAGA-ATTAATGAAGAAACATGTTAGAAACCAAGAGGAGAATGGTAGGACG 723423 Query 578 GATACGAACAACAACCAAATGTTATCATCGACGATTTCTACGGATGGATCAAATACGACG 637 |||| | |||||||| ||||| | || |||| || || ||||||||||||| ||| | Sbjct 723424 GATATGCGCAACAACCCAATGTATTAATTGACGGCTTTTAGGGATGGATCAAATGCGATG 723483 Query 638 AACTATTAAAAATAATGGATAGATACCCATACAGA 672 || | | || | | || ||||| ||||||||| Sbjct 723484 AATTGTCGAAGACATGCGACAGATATCCATACAGA 723518 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5564585609124