Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07] 13,131 sequences; 129,810,970 total letters Query= NC_014929.1 Length=1703 Score E Sequences producing significant alignments: (Bits) Value seq10842 93.3 5e-16 >seq10842 Length=63521 Score = 93.3 bits (102), Expect = 5e-16 Identities = 186/274 (68%), Gaps = 5/274 (2%) Strand=Plus/Plus Query 472 AAAACATGGGTCTACTACTACTGGGGACCACCAGGCACGGGAAAATCACGACGAGCTCTG 531 |||||| | | || |||||| || || ||||| |||||| ||||| |||||| Sbjct 55466 AAAACAGAGATATATTACTACCATGGTCCGCCAGGTGTGGGAAAGTCACGCCGAGCTTAT 55525 Query 532 GAAGAAGCATCCCAAATCAACAGCAATAGT-ATATACTACAAACCACGTGGACTCTGGTG 590 || || ||| || |||| | | | || |||||||| || | ||| |||||| Sbjct 55526 GAGGAGGCA----AAGGCAACTGGAGAATCCATCTACTACAAGCCGAGAGGAGACTGGTG 55581 Query 591 GGACGGTTATCATCAACAAGAAAATGTCATCATAGACGATTTCTACGGATGGATAAAGTA 650 |||||| ||| ||| ||| || ||||| || || ||| ||| || ||| | ||||| Sbjct 55582 GGACGGCTATATTCAGCAACCCAACGTCATTATCGATGATCACTATGGGTGGCTTAAGTA 55641 Query 651 CGACGAACTCCTCAAAATAACTGACCGCTACCCATATAAAGTACAAATCAAAGGAGGATT 710 |||||||| ||||| || | |||| ||||| || ||| | || ||||| | Sbjct 55642 TGACGAACTTCTCAAGATCATGAACCGATACCCCTACCGAGTTCCTATTAAAGGCTCTTA 55701 Query 711 TGAGGAGTTCACATCAAAACGCATTTGGTTTACA 744 |||| ||||| || ||| | || ||| | ||| Sbjct 55702 CGAGGTGTTCAACTCCAAAAGAATCTGGATAACA 55735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5340054868274