Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07]
13,131 sequences; 129,810,970 total letters
Query= NC_021568.1
Length=1832
Score E
Sequences producing significant alignments: (Bits) Value
seq10842 116 4e-23
seq10267 107 2e-20
>seq10842
Length=63521
Score = 116 bits (128), Expect = 4e-23
Identities = 159/221 (72%), Gaps = 1/221 (0%)
Strand=Plus/Plus
Query 698 GCAAAG-CTACAGGAGAAGATACCTACTACAAACCAAGAGGAGAATGGTGGGATGGATAC 756
|||||| | || |||||| | ||||||||| || |||||||| |||||||| || ||
Sbjct 55532 GCAAAGGCAACTGGAGAATCCATCTACTACAAGCCGAGAGGAGACTGGTGGGACGGCTAT 55591
Query 757 TGTGGACAACCTAATGTGGTCATCGACGACTTTTATGGATGGATTAAATATGACGAACTT 816
| ||||| || || | ||||| || ||||| ||| |||| ||||||||||||
Sbjct 55592 ATTCAGCAACCCAACGTCATTATCGATGATCACTATGGGTGGCTTAAGTATGACGAACTT 55651
Query 817 CTCAAAATTTGCGACCGATACCCCTACCGCGTCCCAGTCAAAGGAGGATACGAAAACTTC 876
||||| || |||||||||||||||| || || | ||||| ||||| |||
Sbjct 55652 CTCAAGATCATGAACCGATACCCCTACCGAGTTCCTATTAAAGGCTCTTACGAGGTGTTC 55711
Query 877 TGCAGCAAGCGAATCTGGATAACTTCTAATTACCCCTTAGA 917
| ||| ||||||||||||| || || |||| ||||
Sbjct 55712 AACTCCAAAAGAATCTGGATAACATCAAACATCCCCATAGA 55752
>seq10267
Length=201018
Score = 107 bits (118), Expect = 2e-20
Identities = 105/133 (79%), Gaps = 2/133 (2%)
Strand=Plus/Minus
Query 712 GAAGATACCTACTACAAACCAAGAGGAGAATGGTGGGATGGATACTGTGGA-CAACCTAA 770
||||| || | |||||||||||||||||||||| ||| ||||| |||| | ||||| ||
Sbjct 41608 GAAGAAACATGTTACAAACCAAGAGGAGAATGGTAGGACGGATA-TGTGCAACAACCCAA 41550
Query 771 TGTGGTCATCGACGACTTTTATGGATGGATTAAATATGACGAACTTCTCAAAATTTGCGA 830
||| | || ||||||||||| |||||||| |||| |||||| | || || || ||| |
Sbjct 41549 TGTAATAATTGACGACTTTTACGGATGGATCAAATGCGACGAATTGCTGAAGATATGCAA 41490
Query 831 CCGATACCCCTAC 843
| ||| || |||
Sbjct 41489 CAGATGTCCATAC 41477
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 5752797275708
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |