Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07] 13,131 sequences; 129,810,970 total letters Query= NC_021568.1 Length=1832 Score E Sequences producing significant alignments: (Bits) Value seq10842 116 4e-23 seq10267 107 2e-20 >seq10842 Length=63521 Score = 116 bits (128), Expect = 4e-23 Identities = 159/221 (72%), Gaps = 1/221 (0%) Strand=Plus/Plus Query 698 GCAAAG-CTACAGGAGAAGATACCTACTACAAACCAAGAGGAGAATGGTGGGATGGATAC 756 |||||| | || |||||| | ||||||||| || |||||||| |||||||| || || Sbjct 55532 GCAAAGGCAACTGGAGAATCCATCTACTACAAGCCGAGAGGAGACTGGTGGGACGGCTAT 55591 Query 757 TGTGGACAACCTAATGTGGTCATCGACGACTTTTATGGATGGATTAAATATGACGAACTT 816 | ||||| || || | ||||| || ||||| ||| |||| |||||||||||| Sbjct 55592 ATTCAGCAACCCAACGTCATTATCGATGATCACTATGGGTGGCTTAAGTATGACGAACTT 55651 Query 817 CTCAAAATTTGCGACCGATACCCCTACCGCGTCCCAGTCAAAGGAGGATACGAAAACTTC 876 ||||| || |||||||||||||||| || || | ||||| ||||| ||| Sbjct 55652 CTCAAGATCATGAACCGATACCCCTACCGAGTTCCTATTAAAGGCTCTTACGAGGTGTTC 55711 Query 877 TGCAGCAAGCGAATCTGGATAACTTCTAATTACCCCTTAGA 917 | ||| ||||||||||||| || || |||| |||| Sbjct 55712 AACTCCAAAAGAATCTGGATAACATCAAACATCCCCATAGA 55752 >seq10267 Length=201018 Score = 107 bits (118), Expect = 2e-20 Identities = 105/133 (79%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 712 GAAGATACCTACTACAAACCAAGAGGAGAATGGTGGGATGGATACTGTGGA-CAACCTAA 770 ||||| || | |||||||||||||||||||||| ||| ||||| |||| | ||||| || Sbjct 41608 GAAGAAACATGTTACAAACCAAGAGGAGAATGGTAGGACGGATA-TGTGCAACAACCCAA 41550 Query 771 TGTGGTCATCGACGACTTTTATGGATGGATTAAATATGACGAACTTCTCAAAATTTGCGA 830 ||| | || ||||||||||| |||||||| |||| |||||| | || || || ||| | Sbjct 41549 TGTAATAATTGACGACTTTTACGGATGGATCAAATGCGACGAATTGCTGAAGATATGCAA 41490 Query 831 CCGATACCCCTAC 843 | ||| || ||| Sbjct 41489 CAGATGTCCATAC 41477 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5752797275708