Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07]
13,131 sequences; 129,810,970 total letters
Query= NC_023867.1
Length=1740
Score E
Sequences producing significant alignments: (Bits) Value
seq10842 89.7 6e-15
seq10267 80.6 3e-12
>seq10842
Length=63521
Score = 89.7 bits (98), Expect = 6e-15
Identities = 143/202 (71%), Gaps = 14/202 (7%)
Strand=Plus/Minus
Query 849 TTTGTTGTTATCCATAATTTCTCT----GTTGTAAATTCCTCGAATCCTCCTTTCACTTG 904
|||| ||||||||| | |||| | |||| | | ||||| | ||||| | |
Sbjct 55740 TTTGATGTTATCCAGA--TTCTTTTGGAGTTGAACA--CCTCGTAAGAGCCTTTAATAGG 55685
Query 905 AACTTGGTATGGGTAGCGGTCCATAATTTTGAGCATTTCGTCATATTTTATCCATCCGTA 964
|||| |||| ||||| |||| ||| || ||||| | ||||||||| || | ||| || ||
Sbjct 55684 AACTCGGTAGGGGTATCGGTTCATGATCTTGAGAAGTTCGTCATACTTAAGCCACCCATA 55625
Query 965 GAAGTCATCGATTATTACGCATTTTTGTTGTTGG---TATCCGTCCCACCATAGTCCTCT 1021
| |||||||| || ||| || |||| || || ||||||||||| ||||||
Sbjct 55624 GTGATCATCGATAATGACG---TTGGGTTGCTGAATATAGCCGTCCCACCAGTCTCCTCT 55568
Query 1022 GGGCTTGTAATATATTGAGTCT 1043
|||||||| || || || |||
Sbjct 55567 CGGCTTGTAGTAGATGGATTCT 55546
>seq10267
Length=201018
Score = 80.6 bits (88), Expect = 3e-12
Identities = 85/110 (77%), Gaps = 4/110 (4%)
Strand=Plus/Plus
Query 930 ATTTTGAGCATTTCGTCATATTTTATCCATCCGTAGAAGTCATCGATTATTACGCATT-- 987
|| || |||| |||||| |||| ||||||||||| ||||| || ||||||| ||||
Sbjct 41496 ATCTTCAGCAATTCGTCGCATTTGATCCATCCGTAAAAGTCGTCAATTATTA--CATTGG 41553
Query 988 TTTGTTGTTGGTATCCGTCCCACCATAGTCCTCTGGGCTTGTAATATATT 1037
|||||| ||||||||| ||||| |||||| || |||||| || ||
Sbjct 41554 GTTGTTGCACATATCCGTCCTACCATTCTCCTCTTGGTTTGTAACATGTT 41603
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 5458438349476
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |