Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07] 13,131 sequences; 129,810,970 total letters Query= NC_023867.1 Length=1740 Score E Sequences producing significant alignments: (Bits) Value seq10842 89.7 6e-15 seq10267 80.6 3e-12 >seq10842 Length=63521 Score = 89.7 bits (98), Expect = 6e-15 Identities = 143/202 (71%), Gaps = 14/202 (7%) Strand=Plus/Minus Query 849 TTTGTTGTTATCCATAATTTCTCT----GTTGTAAATTCCTCGAATCCTCCTTTCACTTG 904 |||| ||||||||| | |||| | |||| | | ||||| | ||||| | | Sbjct 55740 TTTGATGTTATCCAGA--TTCTTTTGGAGTTGAACA--CCTCGTAAGAGCCTTTAATAGG 55685 Query 905 AACTTGGTATGGGTAGCGGTCCATAATTTTGAGCATTTCGTCATATTTTATCCATCCGTA 964 |||| |||| ||||| |||| ||| || ||||| | ||||||||| || | ||| || || Sbjct 55684 AACTCGGTAGGGGTATCGGTTCATGATCTTGAGAAGTTCGTCATACTTAAGCCACCCATA 55625 Query 965 GAAGTCATCGATTATTACGCATTTTTGTTGTTGG---TATCCGTCCCACCATAGTCCTCT 1021 | |||||||| || ||| || |||| || || ||||||||||| |||||| Sbjct 55624 GTGATCATCGATAATGACG---TTGGGTTGCTGAATATAGCCGTCCCACCAGTCTCCTCT 55568 Query 1022 GGGCTTGTAATATATTGAGTCT 1043 |||||||| || || || ||| Sbjct 55567 CGGCTTGTAGTAGATGGATTCT 55546 >seq10267 Length=201018 Score = 80.6 bits (88), Expect = 3e-12 Identities = 85/110 (77%), Gaps = 4/110 (4%) Strand=Plus/Plus Query 930 ATTTTGAGCATTTCGTCATATTTTATCCATCCGTAGAAGTCATCGATTATTACGCATT-- 987 || || |||| |||||| |||| ||||||||||| ||||| || ||||||| |||| Sbjct 41496 ATCTTCAGCAATTCGTCGCATTTGATCCATCCGTAAAAGTCGTCAATTATTA--CATTGG 41553 Query 988 TTTGTTGTTGGTATCCGTCCCACCATAGTCCTCTGGGCTTGTAATATATT 1037 |||||| ||||||||| ||||| |||||| || |||||| || || Sbjct 41554 GTTGTTGCACATATCCGTCCTACCATTCTCCTCTTGGTTTGTAACATGTT 41603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5458438349476