Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07] 13,131 sequences; 129,810,970 total letters Query= NC_023869.1 Length=1896 Score E Sequences producing significant alignments: (Bits) Value seq10267 113 5e-22 seq10842 80.6 3e-12 >seq10267 Length=201018 Score = 113 bits (124), Expect = 5e-22 Identities = 97/120 (81%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 1051 GTAGGGGTATCTGTCACAAATTTTGAGTAGGTCGTCGTATTTGATCCATCCGTAGAAGTC 1110 ||| || |||||| || || || || | |||||| |||||||||||||||| ||||| Sbjct 41477 GTATGGACATCTGTTGCATATCTTCAGCAATTCGTCGCATTTGATCCATCCGTAAAAGTC 41536 Query 1111 GTCTATAATTACACTTGTTTGTTGGTGGTATCCGTCCCACCATTCTCCTCTTGGTTTGTA 1170 ||| || |||||| | | |||||| ||||||||| |||||||||||||||||||||| Sbjct 41537 GTCAATTATTACATTGGGTTGTTGCACATATCCGTCCTACCATTCTCCTCTTGGTTTGTA 41596 >seq10842 Length=63521 Score = 80.6 bits (88), Expect = 3e-12 Identities = 104/144 (72%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 1034 CCTTTGATCGGTACTTTGTAGGGGTATCTGTCACAAATTTTGAGTAGGTCGTCGTATTTG 1093 ||||| || || ||| ||||||||||| || || ||||| || ||||| || || Sbjct 55695 CCTTTAATAGGAACTCGGTAGGGGTATCGGTTCATGATCTTGAGAAGTTCGTCATACTTA 55636 Query 1094 ATCCATCCGTAGAAGTCGTCTATAATTACACTTGTTTGTTGGTGGTATCCGTCCCACCAT 1153 | ||| || ||| || || ||||| || | | ||| || || ||||||||||| Sbjct 55635 AGCCACCCATAGTGATCATCGATAATGACGTTGGGTTGCTGAATATAGCCGTCCCACCAG 55576 Query 1154 TCTCCTCTTGGTTTGTAGTATATG 1177 |||||||| || |||||||| ||| Sbjct 55575 TCTCCTCTCGGCTTGTAGTAGATG 55552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5957568702652