Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07]
13,131 sequences; 129,810,970 total letters
Query= NC_023874.1
Length=1790
Score E
Sequences producing significant alignments: (Bits) Value
seq10267 93.3 5e-16
seq10842 84.2 2e-13
>seq10267
Length=201018
Score = 93.3 bits (102), Expect = 5e-16
Identities = 93/121 (77%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 727 TTATAAACCCAGAGGAGAATGGTGGGACGGCTACATGCAGCAAACGTCTGTTATTATAGA 786
||| ||||| ||||||||||||| |||||| || |||| ||| | ||| || || ||
Sbjct 41597 TTACAAACCAAGAGGAGAATGGTAGGACGGATATGTGCAACAACCCAATGTAATAATTGA 41538
Query 787 TGACTTCTATGGCTGGATAAAATACGATGAACTGCTGAAAATATGTGACAGATACCCACA 846
||||| || || ||||| |||| ||| ||| ||||||| ||||| |||||| ||| |
Sbjct 41537 CGACTTTTACGGATGGATCAAATGCGACGAATTGCTGAAGATATGCAACAGATGTCCATA 41478
Query 847 C 847
|
Sbjct 41477 C 41477
>seq10842
Length=63521
Score = 84.2 bits (92), Expect = 2e-13
Identities = 106/143 (74%), Gaps = 2/143 (1%)
Strand=Plus/Plus
Query 723 TCTATTATAAACCCAGAGGAGAATGGTGGGACGGCTACATGCAGCAAACGTCTGTTATTA 782
|||| || || || |||||||| |||||||||||||| || |||||| | || ||||
Sbjct 55554 TCTACTACAAGCCGAGAGGAGACTGGTGGGACGGCTATATTCAGCAACCCAACGTCATTA 55613
Query 783 TAGATGACTTCTATGGCTGGATAAAATACGATGAACTGCTGAAAAT-ATGTGACAGATAC 841
| ||||| |||||| ||| | || || || ||||| || || || ||| || |||||
Sbjct 55614 TCGATGATCACTATGGGTGGCTTAAGTATGACGAACTTCTCAAGATCATG-AACCGATAC 55672
Query 842 CCACACAAGGTTCCAATAAAAGG 864
|| || ||||| || |||||
Sbjct 55673 CCCTACCGAGTTCCTATTAAAGG 55695
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 5618416026776
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |