Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07] 13,131 sequences; 129,810,970 total letters Query= NC_023874.1 Length=1790 Score E Sequences producing significant alignments: (Bits) Value seq10267 93.3 5e-16 seq10842 84.2 2e-13 >seq10267 Length=201018 Score = 93.3 bits (102), Expect = 5e-16 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 727 TTATAAACCCAGAGGAGAATGGTGGGACGGCTACATGCAGCAAACGTCTGTTATTATAGA 786 ||| ||||| ||||||||||||| |||||| || |||| ||| | ||| || || || Sbjct 41597 TTACAAACCAAGAGGAGAATGGTAGGACGGATATGTGCAACAACCCAATGTAATAATTGA 41538 Query 787 TGACTTCTATGGCTGGATAAAATACGATGAACTGCTGAAAATATGTGACAGATACCCACA 846 ||||| || || ||||| |||| ||| ||| ||||||| ||||| |||||| ||| | Sbjct 41537 CGACTTTTACGGATGGATCAAATGCGACGAATTGCTGAAGATATGCAACAGATGTCCATA 41478 Query 847 C 847 | Sbjct 41477 C 41477 >seq10842 Length=63521 Score = 84.2 bits (92), Expect = 2e-13 Identities = 106/143 (74%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 723 TCTATTATAAACCCAGAGGAGAATGGTGGGACGGCTACATGCAGCAAACGTCTGTTATTA 782 |||| || || || |||||||| |||||||||||||| || |||||| | || |||| Sbjct 55554 TCTACTACAAGCCGAGAGGAGACTGGTGGGACGGCTATATTCAGCAACCCAACGTCATTA 55613 Query 783 TAGATGACTTCTATGGCTGGATAAAATACGATGAACTGCTGAAAAT-ATGTGACAGATAC 841 | ||||| |||||| ||| | || || || ||||| || || || ||| || ||||| Sbjct 55614 TCGATGATCACTATGGGTGGCTTAAGTATGACGAACTTCTCAAGATCATG-AACCGATAC 55672 Query 842 CCACACAAGGTTCCAATAAAAGG 864 || || ||||| || ||||| Sbjct 55673 CCCTACCGAGTTCCTATTAAAGG 55695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5618416026776