Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07] 13,131 sequences; 129,810,970 total letters Query= NC_024700.1 Length=1773 Score E Sequences producing significant alignments: (Bits) Value seq10842 367 1e-98 seq10267 105 7e-20 >seq10842 Length=63521 Score = 367 bits (406), Expect = 1e-98 Identities = 438/593 (74%), Gaps = 1/593 (0%) Strand=Plus/Plus Query 232 TACCAAAACAAAGACTACTGCACGAAAACCGACAAAGAAGCATGGACATGGGGAGTACCA 291 ||||||||||| || || ||| | |||||||| || | || ||| || ||| ||| Sbjct 55240 TACCAAAACAAGGAATATTGCTCAAAAACCGATGAAAATGCTTGGGAATTCGGACAACCC 55299 Query 292 ATTAAACAAGGACAATGCACAGATCTTAAAAGAGCATGCAAGGCTATAAAAGAAGGAAAA 351 | ||||| ||| || | | || | ||| | || ||| ||||| | ||||| |||| Sbjct 55300 ACTAAACCAGGCGAAAGAAACGAAATCAAACGCGCCTGCCTAGCTATCAGAGAAGAAAAA 55359 Query 352 AGTATGAAATATATATGCGAAAACTTCGACGATATTTATGTTAGATATTGGAGAGGTCTG 411 |||||||||||||| || ||| | | |||||| |||| |||||||||||| ||||||| Sbjct 55360 AGTATGAAATATATTTGTGAAGAATACGACGACGTTTACGTTAGATATTGGCGAGGTCTC 55419 Query 412 TACAAGCTTAAAGAAACGC-TTGCTCCGCCACCAGAAAGAGATTTTCCAACAGAAGTTTA 470 || || ||| ||| || |||||||| || |||| ||| |||||| | || Sbjct 55420 CACGAGTACAAAAAAAAATATTAACCCGCCACCTGACCGAGACTTTAAAACAGAGATATA 55479 Query 471 TTACTACTATGGTGAACCAGGTGTGGGAAAATCACGTAGAGCTTATTCAGAAGCCAAAGC 530 ||||||| ||||| |||||||||||||| ||||| |||||||| || || || || Sbjct 55480 TTACTACCATGGTCCGCCAGGTGTGGGAAAGTCACGCCGAGCTTATGAGGAGGCAAAGGC 55539 Query 531 TACAAATGAATCAATTTACTACAAACCCAGAGGAGATTGGTGGGATGGATACGAACAACA 590 || ||||| || |||||||| || |||||||| |||||||| || || || || Sbjct 55540 AACTGGAGAATCCATCTACTACAAGCCGAGAGGAGACTGGTGGGACGGCTATATTCAGCA 55599 Query 591 ACCAAATGTTATCATCGACGATTTCTACGGATGGATCAAATACGACGAACTATTAAAAAT 650 ||| || || || ||||| ||| ||| || ||| | || || |||||||| | || || Sbjct 55600 ACCCAACGTCATTATCGATGATCACTATGGGTGGCTTAAGTATGACGAACTTCTCAAGAT 55659 Query 651 AATGGATAGATACCCATACAGAGTACCAGTAAAAGGAGGATACCAAATTTTTAACTCAAA 710 ||| | ||||||| ||| |||| || | ||||| ||| | | || ||||| || Sbjct 55660 CATGAACCGATACCCCTACCGAGTTCCTATTAAAGGCTCTTACGAGGTGTTCAACTCCAA 55719 Query 711 AAGAATTTGGATAACATCTAATATCCCCATTGACCAATTATATAAACATTCCCATTTCAT 770 |||||| ||||||||||| || |||||||| || ||| | |||||||| |||||||| | Sbjct 55720 AAGAATCTGGATAACATCAAACATCCCCATAGAACAACTGTATAAACACTCCCATTTTAA 55779 Query 771 TCCCCAAGCCATCGAAAGACGATGTACAAAAATTGAATATATGCAATAAATTT 823 |||||||| || ||||||||||||| ||||||||||||| |||||| || Sbjct 55780 CCCCCAAGCTATAATAAGACGATGTACACTAATTGAATATATGGAATAAAATT 55832 Score = 127 bits (140), Expect = 2e-26 Identities = 180/252 (71%), Gaps = 1/252 (0%) Strand=Plus/Plus Query 201 AATACATATTGAAATTGC-ACGAGGTGATGACTACCAAAACAAAGACTACTGCACGAAAA 259 ||| || || ||||| || | ||| || ||||| ||||||||||| || ||| | || Sbjct 57978 AATTCACATCGAAATCGCTAAAAGGAGACGACTATCAAAACAAAGATTATTGCTCAAAGG 58037 Query 260 CCGACAAAGAAGCATGGACATGGGGAGTACCAATTAAACAAGGACAATGCACAGATCTTA 319 ||| | ||||| || ||| ||||| |||||||| ||| | | ||| ||| Sbjct 58038 AGGACCCTAATCCATGGCAATTTGGACAACCAAGAAAACAAGGCCAACGAAATGATATTA 58097 Query 320 AAAGAGCATGCAAGGCTATAAAAGAAGGAAAAAGTATGAAATATATATGCGAAAACTTCG 379 ||||||||||| | || || ||||||||||||||||||| ||||||||| | | | Sbjct 58098 AAAGAGCATGCCAAGCCATCCGCGAAGGAAAAAGTATGAAATTCATATGCGAAGAATATG 58157 Query 380 ACGATATTTATGTTAGATATTGGAGAGGTCTGTACAAGCTTAAAGAAACGCTTGCTCCGC 439 ||| | || ||||||||||||||||| | || || || ||| ||||||||| Sbjct 58158 GTGATGTATACGTTAGATATTGGAGAGGATTACACGAGTACAAGAAAATTATTGCTCCGC 58217 Query 440 CACCAGAAAGAG 451 ||| || |||| Sbjct 58218 AACCTGAGAGAG 58229 >seq10267 Length=201018 Score = 105 bits (116), Expect = 7e-20 Identities = 118/155 (76%), Gaps = 2/155 (1%) Strand=Plus/Minus Query 519 AGAAGC-CAAAGCTACAAATGAATCAATTTACTACAAACCCAGAGGAGATTGGTGGGATG 577 |||||| ||||| || |||||| || | |||||||| |||||||| |||| ||| | Sbjct 41627 AGAAGCACAAAGA-ACCAATGAAGAAACATGTTACAAACCAAGAGGAGAATGGTAGGACG 41569 Query 578 GATACGAACAACAACCAAATGTTATCATCGACGATTTCTACGGATGGATCAAATACGACG 637 |||| | |||||||| ||||| || || ||||| || |||||||||||||||| ||||| Sbjct 41568 GATATGTGCAACAACCCAATGTAATAATTGACGACTTTTACGGATGGATCAAATGCGACG 41509 Query 638 AACTATTAAAAATAATGGATAGATACCCATACAGA 672 || | | || ||| | |||| |||||| || Sbjct 41508 AATTGCTGAAGATATGCAACAGATGTCCATACGGA 41474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5564023616494