Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07]
13,131 sequences; 129,810,970 total letters
Query= NC_024700.1
Length=1773
Score E
Sequences producing significant alignments: (Bits) Value
seq10842 367 1e-98
seq10267 105 7e-20
>seq10842
Length=63521
Score = 367 bits (406), Expect = 1e-98
Identities = 438/593 (74%), Gaps = 1/593 (0%)
Strand=Plus/Plus
Query 232 TACCAAAACAAAGACTACTGCACGAAAACCGACAAAGAAGCATGGACATGGGGAGTACCA 291
||||||||||| || || ||| | |||||||| || | || ||| || ||| |||
Sbjct 55240 TACCAAAACAAGGAATATTGCTCAAAAACCGATGAAAATGCTTGGGAATTCGGACAACCC 55299
Query 292 ATTAAACAAGGACAATGCACAGATCTTAAAAGAGCATGCAAGGCTATAAAAGAAGGAAAA 351
| ||||| ||| || | | || | ||| | || ||| ||||| | ||||| ||||
Sbjct 55300 ACTAAACCAGGCGAAAGAAACGAAATCAAACGCGCCTGCCTAGCTATCAGAGAAGAAAAA 55359
Query 352 AGTATGAAATATATATGCGAAAACTTCGACGATATTTATGTTAGATATTGGAGAGGTCTG 411
|||||||||||||| || ||| | | |||||| |||| |||||||||||| |||||||
Sbjct 55360 AGTATGAAATATATTTGTGAAGAATACGACGACGTTTACGTTAGATATTGGCGAGGTCTC 55419
Query 412 TACAAGCTTAAAGAAACGC-TTGCTCCGCCACCAGAAAGAGATTTTCCAACAGAAGTTTA 470
|| || ||| ||| || |||||||| || |||| ||| |||||| | ||
Sbjct 55420 CACGAGTACAAAAAAAAATATTAACCCGCCACCTGACCGAGACTTTAAAACAGAGATATA 55479
Query 471 TTACTACTATGGTGAACCAGGTGTGGGAAAATCACGTAGAGCTTATTCAGAAGCCAAAGC 530
||||||| ||||| |||||||||||||| ||||| |||||||| || || || ||
Sbjct 55480 TTACTACCATGGTCCGCCAGGTGTGGGAAAGTCACGCCGAGCTTATGAGGAGGCAAAGGC 55539
Query 531 TACAAATGAATCAATTTACTACAAACCCAGAGGAGATTGGTGGGATGGATACGAACAACA 590
|| ||||| || |||||||| || |||||||| |||||||| || || || ||
Sbjct 55540 AACTGGAGAATCCATCTACTACAAGCCGAGAGGAGACTGGTGGGACGGCTATATTCAGCA 55599
Query 591 ACCAAATGTTATCATCGACGATTTCTACGGATGGATCAAATACGACGAACTATTAAAAAT 650
||| || || || ||||| ||| ||| || ||| | || || |||||||| | || ||
Sbjct 55600 ACCCAACGTCATTATCGATGATCACTATGGGTGGCTTAAGTATGACGAACTTCTCAAGAT 55659
Query 651 AATGGATAGATACCCATACAGAGTACCAGTAAAAGGAGGATACCAAATTTTTAACTCAAA 710
||| | ||||||| ||| |||| || | ||||| ||| | | || ||||| ||
Sbjct 55660 CATGAACCGATACCCCTACCGAGTTCCTATTAAAGGCTCTTACGAGGTGTTCAACTCCAA 55719
Query 711 AAGAATTTGGATAACATCTAATATCCCCATTGACCAATTATATAAACATTCCCATTTCAT 770
|||||| ||||||||||| || |||||||| || ||| | |||||||| |||||||| |
Sbjct 55720 AAGAATCTGGATAACATCAAACATCCCCATAGAACAACTGTATAAACACTCCCATTTTAA 55779
Query 771 TCCCCAAGCCATCGAAAGACGATGTACAAAAATTGAATATATGCAATAAATTT 823
|||||||| || ||||||||||||| ||||||||||||| |||||| ||
Sbjct 55780 CCCCCAAGCTATAATAAGACGATGTACACTAATTGAATATATGGAATAAAATT 55832
Score = 127 bits (140), Expect = 2e-26
Identities = 180/252 (71%), Gaps = 1/252 (0%)
Strand=Plus/Plus
Query 201 AATACATATTGAAATTGC-ACGAGGTGATGACTACCAAAACAAAGACTACTGCACGAAAA 259
||| || || ||||| || | ||| || ||||| ||||||||||| || ||| | ||
Sbjct 57978 AATTCACATCGAAATCGCTAAAAGGAGACGACTATCAAAACAAAGATTATTGCTCAAAGG 58037
Query 260 CCGACAAAGAAGCATGGACATGGGGAGTACCAATTAAACAAGGACAATGCACAGATCTTA 319
||| | ||||| || ||| ||||| |||||||| ||| | | ||| |||
Sbjct 58038 AGGACCCTAATCCATGGCAATTTGGACAACCAAGAAAACAAGGCCAACGAAATGATATTA 58097
Query 320 AAAGAGCATGCAAGGCTATAAAAGAAGGAAAAAGTATGAAATATATATGCGAAAACTTCG 379
||||||||||| | || || ||||||||||||||||||| ||||||||| | | |
Sbjct 58098 AAAGAGCATGCCAAGCCATCCGCGAAGGAAAAAGTATGAAATTCATATGCGAAGAATATG 58157
Query 380 ACGATATTTATGTTAGATATTGGAGAGGTCTGTACAAGCTTAAAGAAACGCTTGCTCCGC 439
||| | || ||||||||||||||||| | || || || ||| |||||||||
Sbjct 58158 GTGATGTATACGTTAGATATTGGAGAGGATTACACGAGTACAAGAAAATTATTGCTCCGC 58217
Query 440 CACCAGAAAGAG 451
||| || ||||
Sbjct 58218 AACCTGAGAGAG 58229
>seq10267
Length=201018
Score = 105 bits (116), Expect = 7e-20
Identities = 118/155 (76%), Gaps = 2/155 (1%)
Strand=Plus/Minus
Query 519 AGAAGC-CAAAGCTACAAATGAATCAATTTACTACAAACCCAGAGGAGATTGGTGGGATG 577
|||||| ||||| || |||||| || | |||||||| |||||||| |||| ||| |
Sbjct 41627 AGAAGCACAAAGA-ACCAATGAAGAAACATGTTACAAACCAAGAGGAGAATGGTAGGACG 41569
Query 578 GATACGAACAACAACCAAATGTTATCATCGACGATTTCTACGGATGGATCAAATACGACG 637
|||| | |||||||| ||||| || || ||||| || |||||||||||||||| |||||
Sbjct 41568 GATATGTGCAACAACCCAATGTAATAATTGACGACTTTTACGGATGGATCAAATGCGACG 41509
Query 638 AACTATTAAAAATAATGGATAGATACCCATACAGA 672
|| | | || ||| | |||| |||||| ||
Sbjct 41508 AATTGCTGAAGATATGCAACAGATGTCCATACGGA 41474
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 5564023616494
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |