Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07] 13,131 sequences; 129,810,970 total letters Query= NC_025476.1 Length=1865 Score E Sequences producing significant alignments: (Bits) Value seq10842 93.3 5e-16 seq10267 86.0 7e-14 >seq10842 Length=63521 Score = 93.3 bits (102), Expect = 5e-16 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 936 CCTTTGACAGGGACTCTGTAAGGATATCTGTCGCAGATCTTGAGAAGCTCGTCGTATTTG 995 ||||| | ||| |||| ||| || |||| || |||||||||||| ||||| || || Sbjct 55695 CCTTTAATAGGAACTCGGTAGGGGTATCGGTTCATGATCTTGAGAAGTTCGTCATACTTA 55636 Query 996 ATCCATCCGTAGAAGTCATCGATAACAACGCAGGGTTGTCCGGTGTATCCATCCCACCAT 1055 | ||| || ||| |||||||||| ||| |||||| | || || |||||||| Sbjct 55635 AGCCACCCATAGTGATCATCGATAATGACGTTGGGTTGCTGAATATAGCCGTCCCACCAG 55576 Query 1056 TCTCCGCGCGGCTTGTAGTAG 1076 ||||| | ||||||||||||| Sbjct 55575 TCTCCTCTCGGCTTGTAGTAG 55555 >seq10267 Length=201018 Score = 86.0 bits (94), Expect = 7e-14 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 950 TCTGTAAGGATATCTGTCGCAGATCTTGAGAAGCTCGTCGTATTTGATCCATCCGTAGAA 1009 || ||| ||| |||||| ||| ||||| || | |||||| |||||||||||||||| || Sbjct 41474 TCCGTATGGACATCTGTTGCATATCTTCAGCAATTCGTCGCATTTGATCCATCCGTAAAA 41533 Query 1010 GTCATCGATAACAACGCAGGGTTGTCCGGTGTATCCATCCCACCATTCTCCGCGCGGCTT 1069 ||| || || | || ||||||| ||||| ||| |||||||||| | || || Sbjct 41534 GTCGTCAATTATTACATTGGGTTGTTGCACATATCCGTCCTACCATTCTCCTCTTGGTTT 41593 Query 1070 GTAGTAGGTTTC 1081 ||| | ||||| Sbjct 41594 GTAACATGTTTC 41605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5858382542726