Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Modiolus_20philippinarum_20[genbank_20GCA_5F002080025.1_202017-04- 05] 74,573 sequences; 2,629,556,424 total letters Query= NC_023436.1 Length=2259 Score E Sequences producing significant alignments: (Bits) Value seq61993 93.3 6e-16 seq10873 84.2 3e-13 seq58507 78.8 1e-11 seq42417 77.0 5e-11 >seq61993 Length=59811 Score = 93.3 bits (102), Expect = 6e-16 Identities = 140/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 1349 AATTAGCAAAGACAATCACATGGGGAATGGGGTACATCTTCGTGCAAGAAGTGTACTTGG 1408 ||||||| | ||||||||||| |||||| || |||||| | | || ||||| | Sbjct 41774 AATTAGCCATTACAATCACATGCGGAATGTCATATATCTTCATCCCTGATTCATACTTCG 41715 Query 1409 GAGAGAACATCAAACCATTTTTGATAGATTCAATCACCTCATAGTTGAAATGATCAACCT 1468 | |||||| |||||| || || ||| || || |||||||| | ||||| | Sbjct 41714 TACTTAACATCCGACCATTCTTTATGCTTTCCATTACTTCATAGTTAATGTGATCTTGTT 41655 Query 1469 GAGATCTGGACAAATCAAACACAACCACACGCTCACCGTTGTACGCATACTTAATGTCAG 1528 || ||| |||||||| | ||| | | || || ||||| || ||||||||||| | Sbjct 41654 GACTTCTAACTAAATCAAATATAACGATCCTTTCTCCATTGTATGCGTACTTAATGTCCG 41595 Query 1529 CACTCTTTCCGTTTTCAAA 1547 ||||||||| || ||||| Sbjct 41594 AACTCTTTCCATTCTCAAA 41576 >seq10873 Length=91012 Score = 84.2 bits (92), Expect = 3e-13 Identities = 138/199 (69%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 1349 AATTAGCAAAGACAATCACATGGGGAATGGGGTACATCTTCGTGCAAGAAGTGTACTTGG 1408 ||||| ||| ||||| | ||| |||||| | |||||| | | || ||||| | Sbjct 79495 AATTACTAAATACAATTAAATGCGGAATGTCAAATATCTTCATCCCTGATTCATACTTCG 79436 Query 1409 GAGAGAACATCAAACCATTTTTGATAGATTCAATCACCTCATAGTTGAAATGATCAACCT 1468 ||||||| ||||| || || ||| || || |||||||| | ||||| | Sbjct 79435 TGCTGAACATCCTTCCATTCTTTATGCTTTCGATTACTTCATAGTTAATGTGATCTTGTT 79376 Query 1469 GAGATCTGGACAAATCAAACACAACCACACGCTCACCGTTGTACGCATACTTAATGTCAG 1528 | ||| |||||||||||||| | | || |||||||| || ||||||||||| | Sbjct 79375 GGCTTCTAACTAAATCAAACACAACAATTCTTTCTCCGTTGTATGCGTACTTAATGTCCG 79316 Query 1529 CACTCTTTCCGTTTTCAAA 1547 ||||||||| || ||||| Sbjct 79315 AACTCTTTCCATTCTCAAA 79297 >seq58507 Length=53718 Score = 78.8 bits (86), Expect = 1e-11 Identities = 97/133 (73%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 1423 CCATTTTTGATAGATTCAATCACCTCATAGTTGAAATGATCAACCTGAGATCTGGACAAA 1482 |||||||| || ||||| ||||| ||||| |||| | | | ||||||||| | || Sbjct 11328 CCATTTTTTATTGATTCTATCACTTCATAATTGATTTTCACTTCTTGAGATCTGTAAAAG 11387 Query 1483 TCAAACACAACCACACGCTCACCGTTGTACGCATACTTAATGTCAGCACTCTTTCCGTTT 1542 ||||| | || | | | ||||| | ||||||||||| || |||| || |||||| Sbjct 11388 TCAAAAATCACTATTCTTTGTCCGTTCCATGCATACTTAATATCCACACTTTTCCCGTTT 11447 Query 1543 TCAAAACGGATTG 1555 ||||| || |||| Sbjct 11448 TCAAATCGAATTG 11460 >seq42417 Length=166436 Score = 77.0 bits (84), Expect = 5e-11 Identities = 154/226 (68%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 1422 ACCATTTTTGATAGATTCAATCACCTCATAGTTGAAATGATCAACCTGAGATCTGGACAA 1481 ||||||||| || ||| || | ||||| || | |||||| | | ||| |||| Sbjct 99447 ACCATTTTTTATTTGTTCTATGATTTCATAATTAATATGATCTGCAGCACTTCTC-ACAA 99505 Query 1482 A-TCAAACACAACCACACGCTCACCGTTGTACGCATACTTAATGTCAGCACTCTTTCCGT 1540 ||||| | ||| | | |||||| ||||| ||||||||||| || ||||||||||| | Sbjct 99506 GGTCAAAGATAACAATTCTCTCACCTTTGTATGCATACTTAATATCTGCACTCTTTCCAT 99565 Query 1541 TTTCAAAACGGATTGCACCATGCAAAGCAACAAGATATTTAGAAAACCATGTTTTCCCTG 1600 | ||||| | |||||| | | ||||| | | || | ||||||||||| || Sbjct 99566 TGTCAAATCTAATTGCATCTTTGTTTGCAACTAACCACTTTGCTAACCATGTTTTTCCCA 99625 Query 1601 TGTTTCCGACGGAATCACAATACCACATTACTTTACGATCATCTGG 1646 | ||| |||| | ||| |||||||| | |||||| || Sbjct 99626 TTCCTCCACTTTGATCAGTAATCCAAATTACTTTTCTATCATCCGG 99671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7114358552550