Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Modiolus_20philippinarum_20[genbank_20GCA_5F002080025.1_202017-04- 05] 74,573 sequences; 2,629,556,424 total letters Query= NC_023883.1 Length=2308 Score E Sequences producing significant alignments: (Bits) Value seq61993 80.6 4e-12 seq10873 77.0 5e-11 >seq61993 Length=59811 Score = 80.6 bits (88), Expect = 4e-12 Identities = 115/162 (71%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 1389 CTTCATGCCGCTCTCATACTTCGGGCTGAAAACGATACCGTTTTTCACACTCTCCATCAC 1448 |||||| || |||||||||| || || | ||| || || | || ||||| || Sbjct 41737 CTTCATCCCTGATTCATACTTCGTACTTAACATCCGACCATTCTTTATGCTTTCCATTAC 41678 Query 1449 CTCATAGTTAATATGATCTGTCTGTGAACGAGAGAAATCAAAGATGACGATGCGCTGACC 1508 ||||||||||| |||||| || | | |||||||| || ||||| | | || Sbjct 41677 TTCATAGTTAATGTGATCTTGTTGACTTCTAACTAAATCAAATATAACGATCCTTTCTCC 41618 Query 1509 CTTGTATGCGTACTTGATGTCTGCGCTCTTTCCGTTCTCGAA 1550 |||||||||||||| ||||| | |||||||| ||||| || Sbjct 41617 ATTGTATGCGTACTTAATGTCCGAACTCTTTCCATTCTCAAA 41576 >seq10873 Length=91012 Score = 77.0 bits (84), Expect = 5e-11 Identities = 114/162 (70%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 1389 CTTCATGCCGCTCTCATACTTCGGGCTGAAAACGATACCGTTTTTCACACTCTCCATCAC 1448 |||||| || |||||||||| |||||| | | || || || | || || || || Sbjct 79458 CTTCATCCCTGATTCATACTTCGTGCTGAACATCCTTCCATTCTTTATGCTTTCGATTAC 79399 Query 1449 CTCATAGTTAATATGATCTGTCTGTGAACGAGAGAAATCAAAGATGACGATGCGCTGACC 1508 ||||||||||| |||||| || | | |||||||| | || || | | || Sbjct 79398 TTCATAGTTAATGTGATCTTGTTGGCTTCTAACTAAATCAAACACAACAATTCTTTCTCC 79339 Query 1509 CTTGTATGCGTACTTGATGTCTGCGCTCTTTCCGTTCTCGAA 1550 |||||||||||||| ||||| | |||||||| ||||| || Sbjct 79338 GTTGTATGCGTACTTAATGTCCGAACTCTTTCCATTCTCAAA 79297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7271034313932