Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Modiolus_20philippinarum_20[genbank_20GCA_5F002080025.1_202017-04- 05] 74,573 sequences; 2,629,556,424 total letters Query= NC_027783.1 Length=2237 Score E Sequences producing significant alignments: (Bits) Value seq10873 91.5 2e-15 seq61993 84.2 3e-13 seq42417 80.6 4e-12 >seq10873 Length=91012 Score = 91.5 bits (100), Expect = 2e-15 Identities = 137/193 (71%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 1337 AATACAAGTACATGAGGTACTGCAAACACTTTCATTTTACTG--TCAAACTTGGGGCTGA 1394 ||||||| || ||| || | |||| | ||||| ||| ||| |||| | ||||| Sbjct 79487 AATACAATTAAATGCGGAATGTCAAATATCTTCATCC--CTGATTCATACTTCGTGCTGA 79430 Query 1395 ACATGATCCCGTTCTTGACACTCTCCAGTACTTCATAGTTGAAGTGGTCCTCTTGACTCC 1454 |||| | || ||||| | || || | |||||||||||| | ||| || | ||| || | Sbjct 79429 ACATCCTTCCATTCTTTATGCTTTCGATTACTTCATAGTTAATGTGATCTTGTTGGCTTC 79370 Query 1455 GGCTCAGGTCAAAGATAACAATCCTTTCCCCGTTGTACGCATACTTGATGTCTGCGCTTT 1514 | ||||| | |||||| ||||| |||||||| || ||||| ||||| | || | Sbjct 79369 TAACTAAATCAAACACAACAATTCTTTCTCCGTTGTATGCGTACTTAATGTCCGAACTCT 79310 Query 1515 TTCCGTTTTCAAA 1527 |||| || ||||| Sbjct 79309 TTCCATTCTCAAA 79297 >seq61993 Length=59811 Score = 84.2 bits (92), Expect = 3e-13 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 1379 TCAAACTTGGGGCTGAACATGATCCCGTTCTTGACACTCTCCAGTACTTCATAGTTGAAG 1438 ||| |||| | || ||||| || ||||| | || |||| |||||||||||| | | Sbjct 41724 TCATACTTCGTACTTAACATCCGACCATTCTTTATGCTTTCCATTACTTCATAGTTAATG 41665 Query 1439 TGGTCCTCTTGACTCCGGCTCAGGTCAAAGATAACAATCCTTTCCCCGTTGTACGCATAC 1498 || || | |||||| | | ||||| ||||| |||||||| || ||||| || ||| Sbjct 41664 TGATCTTGTTGACTTCTAACTAAATCAAATATAACGATCCTTTCTCCATTGTATGCGTAC 41605 Query 1499 TTGATGTCTGCGCTTTTTCCGTTTTCAAA 1527 || ||||| | || ||||| || ||||| Sbjct 41604 TTAATGTCCGAACTCTTTCCATTCTCAAA 41576 >seq42417 Length=166436 Score = 80.6 bits (88), Expect = 4e-12 Identities = 91/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 1460 AGGTCAAAGATAACAATCCTTTCCCCGTTGTACGCATACTTGATGTCTGCGCTTTTTCCG 1519 ||||||||||||||||| || || || ||||| |||||||| || ||||| || ||||| Sbjct 99505 AGGTCAAAGATAACAATTCTCTCACCTTTGTATGCATACTTAATATCTGCACTCTTTCCA 99564 Query 1520 TTTTCAAACCTCACAGCACCATGCTTAGCACACAGATACTTAGACATCCATGTCTTTCCC 1579 || ||||| || | ||| | | || ||| | |||| | | |||||| |||||| Sbjct 99565 TTGTCAAATCTAATTGCATCTTTGTTTGCAACTAACCACTTTGCTAACCATGTTTTTCCC 99624 Query 1580 AT 1581 || Sbjct 99625 AT 99626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7044014333154