Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematostella_20vectensis_20[refseq_20GCF_5F000209225.1_202007-08-22] 10,804 sequences; 356,613,585 total letters Query= NC_001331.1 Length=7349 Score E Sequences producing significant alignments: (Bits) Value seq9832 215 2e-52 >seq9832 Length=41646 Score = 215 bits (238), Expect = 2e-52 Identities = 167/194 (86%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 6887 GTCAAGGGCCGCGCTCCCGGCTCGTCGGAACAGCTTCACCGTTCCGGCGAACGGAAGCAC 6946 |||| |||||||||||||||||||||||||||||| |||||||||| ||||||||||||| Sbjct 41244 GTCAGGGGCCGCGCTCCCGGCTCGTCGGAACAGCTCCACCGTTCCGTCGAACGGAAGCAC 41185 Query 6947 GGGCGGAGCGCACCCTTGA-ACGCCTCCCCCCTGAAACAGCC--TCCGCTTGGGAGTGTG 7003 ||||| ||||||||||||| || | || ||||| |||| || || ||||||||| Sbjct 41184 GGGCGCAGCGCACCCTTGACGCGGATTGCCTATGAAA-AGCCTATCTGC--GGGAGTGTG 41128 Query 7004 GGGCAGCTTCTCCGCCCCGCGCTCCCGAGCACTCGGCGGCAAGAGCGGGATGACAAGGGC 7063 ||| |||||| | |||| |||||||||| ||||||||||||||||||||||||||||| Sbjct 41127 GGGTAGCTTCATCACCCCATGCTCCCGAGCCCTCGGCGGCAAGAGCGGGATGACAAGGGC 41068 Query 7064 AGAGCCCTTGGTGT 7077 | ||||||||||| Sbjct 41067 CGCGCCCTTGGTGT 41054 Score = 172 bits (190), Expect = 3e-39 Identities = 214/293 (73%), Gaps = 0/293 (0%) Strand=Plus/Minus Query 4507 TCACCGACTTGTCAGGCGTGCGGATCCTGCGGTGCGGCGTGGACACCGTGCGGCAGTTGT 4566 |||| ||| |||||||||| || | ||||| || ||||| || |||||||| ||| ||| Sbjct 40612 TCACTGACCTGTCAGGCGTTCGCCTGCTGCGCTGTGGCGTCGATACCGTGCGCCAGCTGT 40553 Query 4567 ACAACGGCAAGCTCCGGCCGGAAGTCATGGCGCTGTTTGACCTGTCGGTGGATGTGGTCG 4626 |||| || | |||| || || ||||||| | ||||| | | |||||| Sbjct 40552 ACAAAGGGCTGATCCGCCCTGAGGTCATGGGCTTATTTGATAACCCAGGCACCTTGGTCG 40493 Query 4627 AGTTCGCCGGCTACGAATGGTCCAAGGGCCGTATCGGTCGCGACTCTGGCTATCAGTACC 4686 | || |||||| | ||| | ||||||| | || || ||||| || || |||||| Sbjct 40492 ACTTTGCCGGCCAGCGTTGGCACTCGGGCCGTGTAGGCCGTGACTCCGGTTACCAGTACA 40433 Query 4687 GCCTGCAGAACGCCGAAATGGGCCTGATCCTGCTGATCAAGAACCACAACATCAAGGTCG 4746 ||||||||||| || ||||| | ||||||||| | |||||| |||| |||| | | Sbjct 40432 AGCTGCAGAACGCAGACCTGGGCATCATCCTGCTGGTGAAGAACTTCAACGCCAAGCTAG 40373 Query 4747 ACACCATTGGCTCGCACCTCAAGATCGAGGTGTCGCCCCACGCCATTGACGGC 4799 ||| ||| ||| ||||||| || ||||| ||||||||||| ||||| ||| || Sbjct 40372 ACAGCATCGGCCCGCACCTGAAAATCGAAGTGTCGCCCCATGCCATCGACAGC 40320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 23398755652528