Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematostella_20vectensis_20[refseq_20GCF_5F000209225.1_202007-08-22] 10,804 sequences; 356,613,585 total letters Query= NC_003287.2 Length=6407 Score E Sequences producing significant alignments: (Bits) Value seq10800 138 5e-29 seq10776 138 5e-29 seq10499 138 5e-29 seq10473 138 5e-29 seq8562 138 5e-29 seq65 138 5e-29 seq5816 87.8 7e-14 seq6689 78.8 4e-11 >seq10800 Length=2658636 Score = 138 bits (152), Expect = 5e-29 Identities = 76/76 (100%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 5488 ACGCGCCCTGTAGCGGCGCATTAAGCGCGGCGGGTGTGGTGGTTACGCGCAGCGTGACCG 5547 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2657586 ACGCGCCCTGTAGCGGCGCATTAAGCGCGGCGGGTGTGGTGGTTACGCGCAGCGTGACCG 2657527 Query 5548 CTACACTTGCCAGCGC 5563 |||||||||||||||| Sbjct 2657526 CTACACTTGCCAGCGC 2657511 >seq10776 Length=1506508 Score = 138 bits (152), Expect = 5e-29 Identities = 76/76 (100%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 5488 ACGCGCCCTGTAGCGGCGCATTAAGCGCGGCGGGTGTGGTGGTTACGCGCAGCGTGACCG 5547 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1016868 ACGCGCCCTGTAGCGGCGCATTAAGCGCGGCGGGTGTGGTGGTTACGCGCAGCGTGACCG 1016927 Query 5548 CTACACTTGCCAGCGC 5563 |||||||||||||||| Sbjct 1016928 CTACACTTGCCAGCGC 1016943 >seq10499 Length=271653 Score = 138 bits (152), Expect = 5e-29 Identities = 76/76 (100%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 5488 ACGCGCCCTGTAGCGGCGCATTAAGCGCGGCGGGTGTGGTGGTTACGCGCAGCGTGACCG 5547 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 29759 ACGCGCCCTGTAGCGGCGCATTAAGCGCGGCGGGTGTGGTGGTTACGCGCAGCGTGACCG 29700 Query 5548 CTACACTTGCCAGCGC 5563 |||||||||||||||| Sbjct 29699 CTACACTTGCCAGCGC 29684 >seq10473 Length=248406 Score = 138 bits (152), Expect = 5e-29 Identities = 76/76 (100%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 5488 ACGCGCCCTGTAGCGGCGCATTAAGCGCGGCGGGTGTGGTGGTTACGCGCAGCGTGACCG 5547 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 159866 ACGCGCCCTGTAGCGGCGCATTAAGCGCGGCGGGTGTGGTGGTTACGCGCAGCGTGACCG 159925 Query 5548 CTACACTTGCCAGCGC 5563 |||||||||||||||| Sbjct 159926 CTACACTTGCCAGCGC 159941 >seq8562 Length=14492 Score = 138 bits (152), Expect = 5e-29 Identities = 76/76 (100%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 5488 ACGCGCCCTGTAGCGGCGCATTAAGCGCGGCGGGTGTGGTGGTTACGCGCAGCGTGACCG 5547 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 14414 ACGCGCCCTGTAGCGGCGCATTAAGCGCGGCGGGTGTGGTGGTTACGCGCAGCGTGACCG 14473 Query 5548 CTACACTTGCCAGCGC 5563 |||||||||||||||| Sbjct 14474 CTACACTTGCCAGCGC 14489 >seq65 Length=1014 Score = 138 bits (152), Expect = 5e-29 Identities = 76/76 (100%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 5488 ACGCGCCCTGTAGCGGCGCATTAAGCGCGGCGGGTGTGGTGGTTACGCGCAGCGTGACCG 5547 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 106 ACGCGCCCTGTAGCGGCGCATTAAGCGCGGCGGGTGTGGTGGTTACGCGCAGCGTGACCG 47 Query 5548 CTACACTTGCCAGCGC 5563 |||||||||||||||| Sbjct 46 CTACACTTGCCAGCGC 31 >seq5816 Length=6981 Score = 87.8 bits (96), Expect = 7e-14 Identities = 48/48 (100%), Gaps = 0/48 (0%) Strand=Plus/Minus Query 5488 ACGCGCCCTGTAGCGGCGCATTAAGCGCGGCGGGTGTGGTGGTTACGC 5535 |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 48 ACGCGCCCTGTAGCGGCGCATTAAGCGCGGCGGGTGTGGTGGTTACGC 1 >seq6689 Length=7995 Score = 78.8 bits (86), Expect = 4e-11 Identities = 43/43 (100%), Gaps = 0/43 (0%) Strand=Plus/Minus Query 5488 ACGCGCCCTGTAGCGGCGCATTAAGCGCGGCGGGTGTGGTGGT 5530 ||||||||||||||||||||||||||||||||||||||||||| Sbjct 6921 ACGCGCCCTGTAGCGGCGCATTAAGCGCGGCGGGTGTGGTGGT 6879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 20384722037776