Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Radix_20auricularia_20[genbank_20GCA_5F002072015.1_202017-05-10] 4,823 sequences; 909,764,068 total letters Query= NC_027796.1 Length=1826 Score E Sequences producing significant alignments: (Bits) Value seq1769 78.8 1e-11 >seq1769 Length=19540 Score = 78.8 bits (86), Expect = 1e-11 Identities = 100/135 (74%), Gaps = 6/135 (4%) Strand=Plus/Minus Query 609 AACAAATGGTGGGATGGATACAACAATCAGGCTGTTGTAATTATTGACGATTTA---GAT 665 ||||||||||||||||| ||||||||| ||| | |||| || ||||| || || ||| Sbjct 5522 AACAAATGGTGGGATGGCTACAACAATGAGGATATTGTCATAATTGAGGAAATAGAGGAT 5463 Query 666 TCAGATGCTCT-AGG--TCATCACTTAAAGATCTGGGCTGATCACTACCCCTTTATTGCG 722 | || || | | | |||| | | || || ||||||||| |||| || ||| ||| Sbjct 5462 GAACATACTTTCATGTCTCATTTCCTCAAAATATGGGCTGATTACTATCCATTTCCTGCA 5403 Query 723 GAATTCAAAGGTGGT 737 ||| ||||||| ||| Sbjct 5402 GAAATCAAAGGAGGT 5388 Score = 78.8 bits (86), Expect = 1e-11 Identities = 100/135 (74%), Gaps = 6/135 (4%) Strand=Plus/Minus Query 609 AACAAATGGTGGGATGGATACAACAATCAGGCTGTTGTAATTATTGACGATTTA---GAT 665 ||||||||||||||||| ||||||||| ||| | |||| || ||||| || || ||| Sbjct 14657 AACAAATGGTGGGATGGCTACAACAATGAGGATATTGTCATAATTGAGGAAATAGAGGAT 14598 Query 666 TCAGATGCTCT-AGG--TCATCACTTAAAGATCTGGGCTGATCACTACCCCTTTATTGCG 722 | || || | | | |||| | | || || ||||||||| |||| || ||| ||| Sbjct 14597 GAACATACTTTCATGTCTCATTTCCTCAAAATATGGGCTGATTACTATCCATTTCCTGCA 14538 Query 723 GAATTCAAAGGTGGT 737 ||| ||||||| ||| Sbjct 14537 GAAATCAAAGGAGGT 14523 Score = 78.8 bits (86), Expect = 1e-11 Identities = 100/135 (74%), Gaps = 6/135 (4%) Strand=Plus/Minus Query 609 AACAAATGGTGGGATGGATACAACAATCAGGCTGTTGTAATTATTGACGATTTA---GAT 665 ||||||||||||||||| ||||||||| ||| | |||| || ||||| || || ||| Sbjct 17498 AACAAATGGTGGGATGGCTACAACAATGAGGATATTGTCATAATTGAGGAGATAGAGGAT 17439 Query 666 TCAGATGCTCT-AGG--TCATCACTTAAAGATCTGGGCTGATCACTACCCCTTTATTGCG 722 | || || | | | |||| | | || || ||||||||| |||| || ||| ||| Sbjct 17438 GAACATACTTTCATGTCTCATTTCCTCAAAATATGGGCTGATTACTATCCATTTCCTGCA 17379 Query 723 GAATTCAAAGGTGGT 737 ||| ||||||| ||| Sbjct 17378 GAAATCAAAGGAGGT 17364 Score = 78.8 bits (86), Expect = 1e-11 Identities = 100/135 (74%), Gaps = 6/135 (4%) Strand=Plus/Minus Query 609 AACAAATGGTGGGATGGATACAACAATCAGGCTGTTGTAATTATTGACGATTTA---GAT 665 ||||||||||||||||| ||||||||| ||| | |||| || ||||| || || ||| Sbjct 19136 AACAAATGGTGGGATGGCTACAACAATGAGGATATTGTCATAATTGAGGAAATAGAGGAT 19077 Query 666 TCAGATGCTCT-AGG--TCATCACTTAAAGATCTGGGCTGATCACTACCCCTTTATTGCG 722 | || || | | | |||| | | || || ||||||||| |||| || ||| ||| Sbjct 19076 GAACATACTTTCATGTCTCATTTCCTCAAAATATGGGCTGATTACTATCCATTTCCTGCA 19017 Query 723 GAATTCAAAGGTGGT 737 ||| ||||||| ||| Sbjct 19016 GAAATCAAAGGAGGT 19002 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5734106144256