Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ectocarpus_20siliculosus_20[genbank_20GCA_5F000310025.1_202010-06- 24] 1,270 sequences; 195,810,619 total letters Query= NC_003287.2 Length=6407 Score E Sequences producing significant alignments: (Bits) Value seq11 116 2e-22 >seq11 Length=5521395 Score = 116 bits (128), Expect = 2e-22 Identities = 103/129 (80%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 5493 CCCTGTAGCGGCGCATTAAGCGCGGCGGGTGTGGTGGTTACGCGCAGCGTGACCGCTACA 5552 |||| ||||||| | || | ||||| ||| ||||||||| | | | ||||| || || || Sbjct 4718732 CCCTTTAGCGGCCCCTTTAACGCGGGGGGGGTGGTGGTTTCCCCCCGCGTGGCCCCTTCA 4718673 Query 5553 CTTGCCAGCGCCCTAGCGCCCGCTCCTTTCGCTTTCTTCCCTTCCTTTCTCGCCACGTTC 5612 ||| ||||||||| |||||||||||||| ||||| || |||| |||| ||||| |||| Sbjct 4718672 CTTTTCAGCGCCCTTGCGCCCGCTCCTTTTGCTTTTTTTCCTTTCTTTTTCGCCCCGTTT 4718613 Query 5613 GCCGGCTTT 5621 |||| ||| Sbjct 4718612 CCCGGGTTT 4718604 Score = 91.5 bits (100), Expect = 6e-15 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 5646 CTCCCTTTAGGGTTCCGATTTAGTGCTTTACGGCACCTCGACCCCAAAAAACTTGATTTG 5705 |||||||||||| ||||||||| ||| ||||||| ||||| |||||||||||| |||| Sbjct 1767206 CTCCCTTTAGGGCTCCGATTTAATGCCTTACGGCCCCTCGCCCCCAAAAAACTGGATTAA 1767147 Query 5706 GGTGATGGTTCACGTAGTGGGCCATCGCCCTGATAGAC 5743 ||||| || | | ||| ||||||||||||||| Sbjct 1767146 AAAGATGGGGCAGGGGGGGGGGGATCGCCCTGATAGAC 1767109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 20386908717880