Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_021862.1 Length=8576 Score E Sequences producing significant alignments: (Bits) Value seq6744 342 3e-90 >seq6744 Length=1221 Score = 342 bits (378), Expect = 3e-90 Identities = 497/689 (72%), Gaps = 20/689 (3%) Strand=Plus/Plus Query 6814 GCGCTTGTCGATGCCCTGATAGCCGGCATCGCCGAACACGTCGGCCTCCTTGCCATGCAC 6873 ||| ||||| ||||||||| || ||||| || | || | ||||| ||||||| Sbjct 117 GCGTTTGTCTGCGCCCTGATACCCAGCATCACCATAGGCGCTGCTCTCCTGACCATGCAG 176 Query 6874 CAATGCGTTGCGCTGGCGTCACGTCGTTGACGTTGGCGGCCGTGCCCACTACGGTGTGCA 6933 || |||||| || | ||||| |||||||||||| | |||||||| || ||||||| Sbjct 177 CAGCGCGTTGGCCTCG-GTCACATCGTTGACGTTGCCCGCCGTGCCGCGCACCGTGTGCA 235 Query 6934 CCAGCCCCGAGTCCGCATCCACACCAATGTGCGCTTTCATGCCGAAATGCCACTGGTTAC 6993 |||| ||||| | || |||||||| || || || ||||||||||||| |||||| | | Sbjct 236 CCAGACCCGATTGAGCGTCCACACCGATATGGGCCTTCATGCCGAAATACCACTGTTGGC 295 Query 6994 CTTTCTTGGTCTGGTGCATCTCTGGGTCACGCTTGCCGCTGCCATTCTTGGTCGAACTGG 7053 | |||||| |||| |||||||| |||||||||| ||||||| | ||||||||||| |||| Sbjct 296 CCTTCTTGCTCTGATGCATCTCGGGGTCACGCTGGCCGCTGGCGTTCTTGGTCGAGCTGG 355 Query 7054 GCGCGGCAATCAGCGAGGCGTCGACCACCGTGCACGTCTTTGAGCAGGTAGCCCTTCGCA 7113 |||| || ||||||| ||| || |||||||||| || |||||| | |||||| || Sbjct 356 GCGCAGCGATCAGCGTGGCATCCACCACCGTGCCACTC-TTGAGCTGCAGGCCCTTGGC- 413 Query 7114 CTG-AGTTGCGCGTTGACGGTCTGCAGAAATTGCTCGGCTAACTGGTGTCGCTCCAGCAA 7172 ||| | |||||||||||||||| || | | || | || ||| ||||||||| Sbjct 414 CTGCAACAGCGCGTTGACGGTCTGAAGGATCAGTGGCGCCAGCTTGTGCTGCTCCAGCAC 473 Query 7173 GTGCCGAAAGCGCAGAATGCTGACCCGGTCCGGCA----GTCGGCTTATGCCTCCCAGCC 7228 || ||||| || |||||| || | ||| |||| ||||| | ||| | || | Sbjct 474 ATGGCGAAACCGAAGAATGGTGCTCTCGTCGGGCAACCGCTCGGCCCA-GCCCTCAAGGC 532 Query 7229 CCGCGAATTGCCGATACAACGGCACGTCGTACAGCGCCTCTTCCATCGCCACGTCCGTCA 7288 | ||||| | ||| ||| |||||| |||| ||| || |||||||||||| ||||| | Sbjct 533 CGGCGAACTCACGAAACAGCGGCACATCGTGCAGGGCTTCTTCCATCGCCGGGTCCGAGA 592 Query 7289 GCCCGAACCATTGCTGCAGAAAGTGGATGCGCAGCATCGTTTCGACTGGAAACGGCTTCC 7348 | |||||| || |||| || || ||||||| ||| | ||| || || || | Sbjct 593 GGTTGAACCACTGTTGCATGAAATGAATGCGCAACATGGCCTCGGGTGCGAAGGGTGGGC 652 Query 7349 GACC-CGTC-GCCTTGACCGGCGCATGCGGCGCTATCAACGCCAAAAAACGCCTGCCACG 7406 |||| |||| ||||| | ||| | |||| | ||| |||| | | | ||| | Sbjct 653 GACCTCGTCTGCCTT--CGGGCAAGTAAGGCGAGACCAATGCCACCAGA-TCAGACCAAG 709 Query 7407 GCACCACACGTTCCATCTCATCCAGAAATACCTGCTTGCGCGTGCGTCGGTTGC---TCA 7463 ||||||| || ||||||||||| ||||| | || |||||||||| |||| ||| Sbjct 710 GCACCACGCGCTCCATCTCATCGAGAAACTCGCGCCGGCGCGTGCGT---TTGCCTGTCA 766 Query 7464 GGTCCAGGCCAAGGTCGCTTTGTTTCATG 7492 ||||||| || || ||| |||||| Sbjct 767 TCCCCAGGCCCAGTCCGTGTTGCTTCATG 795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 27325146034480