Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_021862.1 Length=8576 Score E Sequences producing significant alignments: (Bits) Value seq4366 143 1e-30 seq2792 120 2e-23 >seq4366 Length=2654 Score = 143 bits (158), Expect = 1e-30 Identities = 332/484 (69%), Gaps = 25/484 (5%) Strand=Plus/Plus Query 6549 GCCCGCGCATCATCCACAGATTGCTCAGGGCAAACAGCGTGTGTAATTGCTGTGTGTTCT 6608 ||| ||||| ||||||||||||| || ||||||| | | || |||||| | Sbjct 436 GCCGGCGCACCATCCACAGATTGGAGAGCGCAAACAAGATCGTCACCTGTGCTGTGTTTT 495 Query 6609 TTATCAAGCCTCGATAGCGCACCCTCAAGTGCCCAAACTGGCGCTTGATGACTCGGAACG 6668 | ||| ||| |||||||| ||| | || ||||||||||||||||| || || |||| Sbjct 496 TGGTCAGGCCGCGATAGCGGACCTTGGTGTAGCCAAACTGGCGCTTGATCACGCGAAACG 555 Query 6669 GATGTTCCACGCGGGCACGAATGCGCGCCTTGACCCGCTCC---AGCTCATCGACGAGCG 6725 |||| | ||| || || | || || |||| | ||| || || || |||| Sbjct 556 GATGCTTCACCTTCGCGCGTACGCTGGCTTTGAAGTGTTCCCACAGTTCTTCCT-GAGCA 614 Query 6726 C--ACCCGACACGGTGCTCTTGTCCA-AGGCGCGG--CGTTTGCCCGGGCGTAATGCCAC 6780 | | || | | ||| || || | ||| | || ||| | |||| ||| | Sbjct 615 CGTATGCG-CTTGCTGCCAATGGCCTGAATCGCCGAACGCTTGGC--GGCG--ATGAAAA 669 Query 6781 ATGCCAACGCACCTTCAACTCCTGCACCTCTTCGCGCTTGTCGATGCCCTG--ATAGCCG 6838 ||| ||| | ||| ||||| | ||||||||| || ||| |||| | ||||||| Sbjct 670 ATGTA---GCATCG-CAA-TCCTGTAGCTCTTCGCGTTTATCG--GCCCCGGTATAGCCG 722 Query 6839 GCATCGCCGAACACGTCGGCCTCCTTGCCATGCACCAATGCGTTGCGCTGGCGTCACGTC 6898 |||||||||||| | | || |||||||||| ||| |||| ||| ||| || || Sbjct 723 CTGTCGCCGAACACGCTGTCTTCTTTGCCATGCAGCAAGGCGT-GCGTCACCGTGACATC 781 Query 6899 GTTGACGTTGGCGGCCGTGCCCACTACGGTGTGCACCAGCCCCGAGTCCG-CATCCACAC 6957 | ||| ||||| || |||| | ||| |||||||||| || ||||||| | Sbjct 782 GGCGACATTGGCCGCTGTGCACTGGACGTGACGCACCAGCCCAGAAAAATTCATCCACGC 841 Query 6958 CAATGTGCGCTTTCATGCCGAAATGCCACTGGTTACCTTTCTTGGTCTGGTGCATCTCTG 7017 | |||||||| ||||| ||||| | |||||| || |||||||||||||| ||||| || | Sbjct 842 CGATGTGCGCCTTCATCCCGAAGTACCACTGATTGCCTTTCTTGGTCTGATGCATTTCAG 901 Query 7018 GGTC 7021 |||| Sbjct 902 GGTC 905 >seq2792 Length=4928 Score = 120 bits (132), Expect = 2e-23 Identities = 585/902 (65%), Gaps = 54/902 (6%) Strand=Plus/Minus Query 6549 GCCCGCGCATCATCCACAGATTGCTCAGGGCAAACAGCGTGTGTAATTGCTGTGTGTTCT 6608 ||| ||||| ||||||||| ||| ||| |||||||| | | ||| ||| ||||| | Sbjct 2110 GCCGGCGCACCATCCACAGGTTGGACAGCGCAAACAGGGCGAGTACCTGCGCGGTGTTTT 2051 Query 6609 TTATCAAGCCTCGATAGCGCACCCTCAAGTGCCCAAACTGGCGCTTGATGACTCGGAACG 6668 | || |||||||| |||||| | || |||||||| || ||||| || || |||| Sbjct 2050 TCGCCAGACCTCGATAACGCACCTTGGTGTAGCCAAACTGCCGTTTGATCACCCG-AACG 1992 Query 6669 GATGTTCCACGCGGGCACGAATGCGCGCCTTGACCCGCTCC-AGCTCATCGACGAGC--- 6724 | ||||| || ||| || |||| || ||| | |||| ||| | || || || Sbjct 1991 GGTGTTCGACCTTGGCGCGTATGCTGGCTTTGCAACTCTCCCAGCGC-TCAACCTGCTTT 1933 Query 6725 -GCACCCGACACGGTGCTCTTGTCCAAGGCGCGGCGTTTGCCC---GGGCGTAATGCCAC 6780 || |||| ||| ||| | | || ||| || | ||| || || Sbjct 1932 CGCTCCCG------TGCG-TTGCCGATCGC------TTTCACCTTTGAGCGCTTGGCAAC 1886 Query 6781 -ATGCCAA-CG-CACCTTCAACTCCTGCACCTCTTCGCGCTTGTCGATGCC-CTGATAGC 6836 ||| || || | |||| | || || || | || ||||| || ||| |||| Sbjct 1885 GATGAAAAACGTCGCCTTGCAGTCGGACAGTTCAGCACGTTTGTCTGCACCGCTG-TAGC 1827 Query 6837 CGGCATCGCCGAACACGTCGGCCTCCTTGCCATGCACCAATGCGTTGCGCTGGC-GTCAC 6895 || |||| ||||||| |||| |||||||| |||| || |||| | || | || || Sbjct 1826 CGCTATCGTCGAACACACCGGCTTCCTTGCCGTGCAACAGCGCGTGGG--TGACTGTGAC 1769 Query 6896 GTCGTTGACGTTGGCGGCCGTGCCCACTACGGTGTGCACCAGCCCCGAGTCCGCATCCAC 6955 ||| || || || ||||||| | ||| ||||||||| || || | || || Sbjct 1768 ATCGCCAACATTAGCTGCCGTGCACTTCACGTGGTGCACCAGACCGGAAAATTCGTCAAC 1709 Query 6956 ACCAATGTGCGCTTTCATGCCGAAATGCCACTGGTTACCTTTCTTGGTCTGGTGCATCTC 7015 || || ||||| ||||| ||||| | ||||||||| || || |||||||| ||| | Sbjct 1708 GCCGATATGCGCCTTCATCCCGAAGTACCACTGGTTGCCCTTGCGGGTCTGGTACATTTA 1649 Query 7016 TGGGTCACGCTTGCCGCTGCCATTCTTGGTCGAACTGGGCGCGGCAATCAGCGAGGCGTC 7075 ||| | ||| | | || | |||||||| ||| | |||||| || | || ||| | Sbjct 1648 CGGGCCGCGCGACCTGTTGGCGTTCTTGGTGGAAGTTGGCGCGTTGATGATCGTGGCATT 1589 Query 7076 GACCACCGTGCACGTCTTTGAGCAGG---TAGCCCTT-CGCACTGAGTTGCGCGTTGACG 7131 || | ||||| | ||||| | |||||| || | || |||||||| || Sbjct 1588 TACGATCGTGCCAGCAC----GCAGGCTTTGGCCCTTGCGGGCA-AGGTGCGCGTTCACC 1534 Query 7132 GTCTGCAGAAATTGCTCGGCTAACTGGTGTCGCTCCAGCAAGTGCCGAAAGCGCAGAATG 7191 | | || | | | || | ||| |||||||| || ||| || || Sbjct 1533 GCTTCGAGCATCTTTGCCGCAAGGCCGTGCGTCTCCAGCAGACAACGGAAGTTGAGGATC 1474 Query 7192 CTGACCCGGTCCGGCAGTCGGCTTATG-CCTCCCAGCCCCGCGAATTGCCGATACAACGG 7250 || | ||||| | ||| | | | || | |||| ||| || |||| | | Sbjct 1473 GTGGTCTCATCCGGAA-TCGCGTCAAGGCCGCTGAGCCGCGCAAACAACCGAATTGAGGC 1415 Query 7251 CACGTCGTACAGCGCCTCTTCCATCGCCACGTCCG-TCAGCCCGAACCATTGCTGCAGAA 7309 | |||| |||||| || ||||| |||| | || ||| | |||| |||||||| | Sbjct 1414 GATCTCGTGCAGCGCTTCCTCCAT-GCCAGGGTCGCTCAATGCATACCACTGCTGCAGCA 1356 Query 7310 AGTGGATGCGCAGCATCGTTTCGACTGGAAACGGCTTCCGACCCGTCGCCTTGACCG-GC 7368 ||||||||||||||||||||| | || ||||| ||||||| ||| | ||| || Sbjct 1355 GGTGGATGCGCAGCATCGTTTCCATTGAGTACGGCGGCCGACCC-ACGC--GGCCCGAGC 1299 Query 7369 GC-----ATGCGGCGCTATCAACGCCAAAAAACGCCTGCCACGGCACCACACGTTCCATC 7423 || ||||||| | ||| ||| | ||||||| ||| || ||||| |||||||| Sbjct 1298 GCGGGTAATGCGGCTCGATCTGGGCC-AGCAACGCCTTCCAGGGGACCACCTGTTCCATC 1240 Query 7424 TC 7425 || Sbjct 1239 TC 1238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 27324284280160