Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F002025845.1_202017-03- 14] 8,544 sequences; 76,969,664 total letters Query= NC_022089.1 Length=3780 Score E Sequences producing significant alignments: (Bits) Value seq3955 279 1e-71 >seq3955 Length=4440 Score = 279 bits (308), Expect = 1e-71 Identities = 480/687 (70%), Gaps = 24/687 (3%) Strand=Plus/Minus Query 1205 GAAGAAAAGAAACGCAAGCTTGATGACATCATCGTCGAAATGCG--CCAACTCATCGAGG 1262 || || ||||| || |||||||||||||||||| |||| ||||| ||| | || || | Sbjct 3121 GAGGAGAAGAAGCGTAAGCTTGATGACATCATCATCGAGATGCGTACCA--TGATTGAAG 3064 Query 1263 AAGGCCGTGAAGAGGAGTCTTTTAGAAAGTTTCCACGAAACCACCTAACGTATGGAGAAA 1322 | || | ||| |||| | || | ||||| ||||| ||| |||| || |||||||||| Sbjct 3063 AGGGGAGAGAAAAGGAAGCCTTCACCAAGTTCCCACGGAACTACCTCACCTATGGAGAAA 3004 Query 1323 AAATCAAGGCTATGGTCATGCAAAAGCGTGACTTCTTCAAGAGCAAAGGAGATCCTCACA 1382 | |||||||| |||||| |||||| | ||||||||||||| ||| ||||| || |||| Sbjct 3003 AGATCAAGGCCATGGTCGGACAAAAGAGAGACTTCTTCAAGAACAATGGAGACCCGCACA 2944 Query 1383 TTTGGTTGTTTGGAAACCCTGGATCCGGCAAGTCAGCCATTCTTCAAGTAATCTACCCAG 1442 | ||| | ||| |||||||| ||||| |||||||| |||||||| ||||||| Sbjct 2943 TCTGGCTCACGGGAGCACCTGGATCAGGCAAATCAGCCATCCTTCAAGTGGTCTACCCCA 2884 Query 1443 AATACTACAACAAGAACGTGGAGAACCGATTCTTCGATC-GT--TATCTTGACGGTCAAC 1499 | |||||||||||| || | | ||||| |||||||| | || | | || | | | Sbjct 2883 ACTACTACAACAAGGACCTTAACAACCGCTTCTTCGACCTGTACAAACCAGAAG---AGC 2827 Query 1500 ACTCCCACGTGCTTCTACAAGATGTCGACCATAATGTCATGGATAATTTGGGCGTTCAAT 1559 || | ||| || || || || || ||||| | |||| | | ||||| || | Sbjct 2826 ACACGCACACTCTACTTCAGGACGTGGACCACGGAACCGTGGAGAGACTAGGCGTGCAGT 2767 Query 1560 TCTTTAAGAGTGTGTGTGACGAAGCGGGCTACCCCATCGACGCCAAGTACAAGACCCCGC 1619 || | |||| | || || |||||||| | ||| || ||| ||||||||||| |||| Sbjct 2766 TCCTCAAGACCATCTGCGATGAAGCGGGATTCCCGATTGACCATAAGTACAAGACTCCGC 2707 Query 1620 AGATCGCGCGACTCACGATCCTCATCTCGTCCAACTTCACCATTGAGGATGTCGTTGCGG 1679 | || | || ||| ||||||||||| ||||| | || ||||| || | | Sbjct 2706 AACTCACTCGTACGACGGCGCTCATCTCGTCGAACTTTTCAATCTCTGATGTTCTTCCTG 2647 Query 1680 AAGAGATCAAAGGGAGACGC---GAAAACGTCACTGCGCTTCAACGTCGATTTTGGCAGG 1736 | || || | ||||| || ||| || |||| || | || || || ||| || Sbjct 2646 AGGATATGCCTG---GACGCAATGAGAACCTCGCTGCTCTACGTCGCCGTTTCTGGGAGA 2590 Query 1737 TAAACATTCGTGACT-TACTTCCTATTCTAGGTGTCAAGTTGTTGTCCAAGTATGAGATC 1795 ||||| ||| ||| | |||| | || || ||||| | |||||||||| |||||| Sbjct 2589 CAAACACCCGT-ACTCTCCTTCAAGTCCTGGGACTCAAGCTACTGTCCAAGTACGAGATC 2531 Query 1796 A-----CCCAA-CTCAAGAAGGCGGGTAACCTCGACCCACGCAAGATCTTCCTCGCCTAC 1849 | | ||| |||||| ||| |||| ||||| |||||| | ||| | ||| Sbjct 2530 AAGGGGCTCAAGCTCAAGCTCAAGGGAAACCAAGACCCCCGCAAGCTATTCATGTCCTGG 2471 Query 1850 GACTATCTTCGTGATGTTCCAACTGGT 1876 ||||||||||| ||| ||| |||||| Sbjct 2470 GACTATCTTCGCGATTGTCCTACTGGT 2444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 11982880095200