Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712715.1_202016-08- 24] 2,034 sequences; 37,458,212 total letters Query= NC_015586.1 Length=5819 Score E Sequences producing significant alignments: (Bits) Value seq1845 214 7e-52 seq1231 138 4e-29 >seq1845 Length=1196 Score = 214 bits (236), Expect = 7e-52 Identities = 283/388 (73%), Gaps = 40/388 (10%) Strand=Plus/Minus Query 4469 CCGGGGTGTAGGGGCAGCGCCCCTACGGAAGCGCTTCACACGCGCTGGCGAGGTATCGGC 4528 |||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||| Sbjct 543 CCGGGGTGTAGGGGCAGCGCCCCTACGGAAACGCCTCACACGCGCTGGCGAGGCCTCGGC 484 Query 4529 CCCGGTACCGGTAGGACTGCTGCCGGCGGTTCGGCGTCGGGGCCAGCCATCGCCCCCGAT 4588 ||| |||| || ||||||| | | || |||||||| ||||||||||||||| ||| Sbjct 483 CCCTGTACTGGCAGGACTGACGTCACTGGATCGGCGTCAGGGCCAGCCATCGCCACCGCC 424 Query 4589 GACCGCCTTTCTCGGCGATG--TGCCAAGGCATCGGAGAGGTTCACCACGCTGGCGGCGT 4646 || ||| || ||| || | ||| | || ||| || || || |||| | | Sbjct 423 GAACGCTGTTT---GCGCTGGCTCACAACGTCCCGCAGA--TTGACGACAGTGGCAG-GA 370 Query 4647 TGAAGGACAAGG----------GTTTCCGTGTTTTGCCG----TTT-------------- 4678 ||| || || | | || || || | | ||| Sbjct 369 TGATGGCGAATGCCGGCGTCGCGATTGCGCACATTTCTGGAACTTTCGATCGACGGTACC 310 Query 4679 GCGCG-GCCGCTCTCCATCATCCGCCGCCATTCCTGCGCCTGCGCAG-CAGTGAGCGACA 4736 | ||| || || |||||||||||| |||||||||||||| || |||| |||||||||||| Sbjct 309 GAGCGTGCAGC-CTCCATCATCCGGCGCCATTCCTGCGCTTG-GCAGGCAGTGAGCGACA 252 Query 4737 GCCAGGCCAGATCTTCGGGCAGCAACTCGCGGCCTTCGGGTGTGACCAGTCGGCCAGCCT 4796 ||||||| ||||| |||||||||||||||||||||||||| || | ||| ||| | || Sbjct 251 GCCAGGCGAGATCCTCGGGCAGCAACTCGCGGCCTTCGGGCGTAATCAGACGGTCGCCCA 192 Query 4797 TAAACGAAAAACCGGCCCAAGGGCCGGT 4824 || ||||||||||||||||||||||| Sbjct 191 GGAAAGAAAAACCGGCCCAAGGGCCGGT 164 >seq1231 Length=2614 Score = 138 bits (152), Expect = 4e-29 Identities = 319/469 (68%), Gaps = 34/469 (7%) Strand=Plus/Plus Query 5367 CCCGCCAACGGCACCCCAAGGCCGCTGGCGGGTTTCCTTGGGGCTTGGGGTAGGGGAACA 5426 ||||||| |||||||||||||||||||||||||| |||||||||||||| ||||| | Sbjct 554 CCCGCCACCGGCACCCCAAGGCCGCTGGCGGGTTCTCTTGGGGCTTGGGG-AGGGGTA-- 610 Query 5427 GGGATGATCGATCCGCTCATTACCTTCGCGCTGCTGGCCGCCATCGTGGCCGTGTCCATT 5486 ||| || || | || || | || |||||||| |||| |||||||| | Sbjct 611 GGGCACATGGACGCACTTGTTCTCGCCGTGCTGCTGGGGTGTATCGCAGCCGTGTCGTTG 670 Query 5487 GGCGGCGCTCGCATCGTTTCGTGGTTGCTCGACCGGCGTGAGTACACCGCCGCGCAGCAG 5546 || || |||| | |||| | || ||||||| | | |||| | | ||| Sbjct 671 GGGTTAGCCAAATTCGTGACCTGGTGTGTTGATCGGCGTGCGCTCTCCGCTGGTC-GCA- 728 Query 5547 CTGC--GCGAA------------GCCCAGG---TCATCGCACT-CGCGCGGGCCGAGATT 5588 |||| ||||| ||||||| || ||| || ||| || || || Sbjct 729 CTGCACGCGAAAGCCAGTTTGTTGCCCAGGCGGTCGTCGACCTTCGC-CGCATGGAAATC 787 Query 5589 GCGGCCACGAAGCGCGGTGATCTGCTCGCTGCCGCTGAGCTGGCCGAAGCCCAGGAGCGA 5648 | ||||| || ||||| | |||||||| || || || || || |||| |||||||| Sbjct 788 GAAGCCACCAAACGCGGCAACCTGCTCGCCGCTGCCGAACTCGCTGAAGAGCAGGAGCGC 847 Query 5649 GTCGCATGAGCA----TCCATACCTTTGCCGCCGAACTTGCGGAGGCCGATATGGGCCTT 5704 | |||||||||| ||| | | ||||||| |||| | |||| ||||||||| ||| Sbjct 848 GCCGCATGAGCAGGTTTCCCT-CATTTGCCG---AACTGGTGGAGTTCGATATGGGTCTT 903 Query 5705 TTCGCATGCGCTGCGCTGATTGTCGCTTGCCTCGGCAGCGCAATAGCT-TCAATCGTGAT 5763 | ||||| ||||| || | || ||| || || || | || ||| || |||||||| Sbjct 904 GCGGGGTGCGCCGCGCTCATCGCCGTTTGGCTGGG-AGTGGCATTGCTCTCCATCGTGAT 962 Query 5764 TGAGCAGTCATGGCTTGCGATCCGTCGCCTGTGGAAGCTCTGGAAGGGC 5812 ||||||| | ||||| || | |||| | || |||| |||||||| Sbjct 963 TGAGCAGGCGTGGCTGGCACTTCGTCACTGGTTCAAGCGGCGGAAGGGC 1011 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 18508388237040