Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712715.1_202016-08- 24] 2,034 sequences; 37,458,212 total letters Query= NC_021569.1 Length=7069 Score E Sequences producing significant alignments: (Bits) Value seq1845 179 2e-41 seq1231 93.3 2e-15 >seq1845 Length=1196 Score = 179 bits (198), Expect = 2e-41 Identities = 289/407 (71%), Gaps = 44/407 (11%) Strand=Plus/Minus Query 6614 TGGCTGCGCTGCCGTGAGCACTGAACCGGGGTGTAGGGGCAGCGCCCCTACGGAAGCGCC 6673 |||| ||||||||| ||||| ||| |||||||||||||||||||||||||||||| |||| Sbjct 567 TGGCAGCGCTGCCGCGAGCAGTGA-CCGGGGTGTAGGGGCAGCGCCCCTACGGAAACGCC 509 Query 6674 TCACACGCGCTGGTAAGGTCTCGGCCCCGGCGCCGGCAGGACACCCGCAACAGGATCGGC 6733 ||||||||||||| ||| ||||||||| | | |||||||| || || |||||||| Sbjct 508 TCACACGCGCTGGCGAGGCCTCGGCCCCTGTACTGGCAGGACTGACGTCACTGGATCGGC 449 Query 6734 GTCAGGACCAGCCATCACCGTGGAAGACCGC--TTTGCGCGG--------CGTTGTGC-- 6781 |||||| ||||||||| || | || ||| ||||||| | ||| || Sbjct 448 GTCAGGGCCAGCCATCGCCACCGCCGAACGCTGTTTGCGCTGGCTCACAACGTCCCGCAG 389 Query 6782 ---GAC--CTCGGCCAGGTCAACG----ATGCCCGCACGCCCGAATG-GC-CGTTTCTG- 6829 ||| | | |||| | | ||||| || | ||| || || | |||||| Sbjct 388 ATTGACGACAGTGGCAGGATGATGGCGAATGCCGGC-GTCGCGATTGCGCACATTTCTGG 330 Query 6830 -AC-------------CACC--TCGGGCAATCTCCATCATCCGGCGCCATTCCTGCGCCT 6873 || ||| || ||| ||||||||||||||||||||||||||| | Sbjct 329 AACTTTCGATCGACGGTACCGAGCGTGCAGCCTCCATCATCCGGCGCCATTCCTGCGCTT 270 Query 6874 GTGCGGCCAG-CAGGGACAGCCATGCAAGGTCCTGCGGTTCCAGCTCGCGGCCTTCGGGG 6932 | || | ||| || |||||||| || || |||| || || ||||||||||||||| Sbjct 269 G-GCAGGCAGTGAGCGACAGCCAGGCGAGATCCTCGGGCAGCAACTCGCGGCCTTCGGGC 211 Query 6933 GTGACCAGTCGGCCAGCCTTAAACGAAAAACCGGCCCAGGGGCCGGT 6979 || | ||| ||| | || || |||||||||||||| |||||||| Sbjct 210 GTAATCAGACGGTCGCCCAGGAAAGAAAAACCGGCCCAAGGGCCGGT 164 >seq1231 Length=2614 Score = 93.3 bits (102), Expect = 2e-15 Identities = 55/56 (98%), Gaps = 1/56 (2%) Strand=Plus/Plus Query 462 CCCGCCACCGGCACCCCAAGGCCGCTGGCGGGTTCTCTTGGGGCTTGGGGCAGGGG 517 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 554 CCCGCCACCGGCACCCCAAGGCCGCTGGCGGGTTCTCTTGGGGCTTGGGG-AGGGG 608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 22505085015608