Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509465.1_202013-12- 18] 6,489 sequences; 48,075,161 total letters Query= NC_022089.1 Length=3780 Score E Sequences producing significant alignments: (Bits) Value seq5227 96.9 8e-17 >seq5227 Length=6359 Score = 96.9 bits (106), Expect = 8e-17 Identities = 364/563 (65%), Gaps = 11/563 (2%) Strand=Plus/Plus Query 1316 GGAGAAAAAATCAAGGCTATGGTCATGCAAAAGCGTGACTTCTTCAAGAGCAAAGGAGAT 1375 || ||||||||||| || ||| | | ||| || |||||||||||| ||||||| | Sbjct 1888 GGCGAAAAAATCAAAGCCATGCTTAACCAACGTCGCGACTTCTTCAAGTCCAAAGGACAC 1947 Query 1376 CCTCACATTTGGTTGTTTGGAAACCCTGGATCCGGCAAGTCAGCCATTCTTCAAGTAATC 1435 || ||||||||| | || |||||| || || ||||| ||||| || || Sbjct 1948 CCACACATTTGGCTTAAAGGTCTGCCTGGAAGTGGTAAAAGTGCCATCCTTCAGGTGGTC 2007 Query 1436 TACCCAGAATACTACAACAAGAACGTGGAGAACCGATTCTTCGATCGTT---ATCTTGAC 1492 |||||||| ||||||||||||| | |||| | ||| ||| | || | | ||| | Sbjct 2008 TACCCAGACTACTACAACAAGAGCCTGGACACCCGTTTCATGGACCTATTCAATC-CCAA 2066 Query 1493 GGTCAACACTCCCACGTGCTTCTACAAGATGTCGACCATAATGTCATGGATAATTTGGGC 1552 || |||| | ||| || | |||||||| || || | || | || || | || Sbjct 2067 AGTGCACACGCACAC--ACTCTTGCAAGATGTTGATCACAGAGTTGTCGAGAAGCTCGGT 2124 Query 1553 GTTCAATTCTTTAAGAGTGTGTGTGACGAAGCGGGCTACCCCATCGACGCCAAGTACAAG 1612 || || || | || | | |||| ||||| | | || | ||| |||| |||| Sbjct 2125 GTACAGTTTCTCAAAACACTATGTGGCGAAGTTGTTTTTCCTTTGGACCAGAAGTTCAAG 2184 Query 1613 ACCCCGCAGATCGC-GCGACTCACGATCCTCATCTCGTCCAACTTCACCATTGAGGATGT 1671 | |||| || ||| | || || | | ||| ||||| || || || |||| Sbjct 2185 GCGGTGCAGCCTGCTAGGACGACGGTTCGTCGTTTTGTCGAACTTTACGATCGACAATGT 2244 Query 1672 CGTTGCGGAAGAGAT--CAAAGGGAGACGCGAAAACGTCACTGCGCTTCAACGTCGATTT 1729 | | ||||| || | | | ||| || || | | |||| | | ||||| || Sbjct 2245 TCTCCCAGAAGACATGCCTGACCG-GAC-AGAGAATCTGATTGCGTTGCGTCGTCGCTTC 2302 Query 1730 TGGCAGGTAAACATTCGTGACTTACTTCCTATTCTAGGTGTCAAGTTGTTGTCCAAGTAT 1789 ||| | ||| ||| || ||| || | || || ||||||||| | | ||||| Sbjct 2303 TGGGAAGTAGACAGCCGCTCCTTTCTACAAATCCTCGGTGTCAAGCTACTTGATAAGTAC 2362 Query 1790 GAGATCACCCAACTCAAGAAGGCGGGTAACCTCGACCCACGCAAGATCTTCCTCGCCTAC 1849 ||| | | ||| |||||| | | ||| | || |||||||||||||| || | | Sbjct 2363 GAGTTGAAGTAACCCAAGAAAGAAAGCAACATGGATCCACGCAAGATCTTTATCACGTGG 2422 Query 1850 GACTATCTTCGTGATGTTCCAAC 1872 |||||| ||||||| ||||||| Sbjct 2423 GACTATGGTCGTGATATTCCAAC 2445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 11983149454325