Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509485.1_202013-12- 18] 6,813 sequences; 47,449,104 total letters Query= NC_022089.1 Length=3780 Score E Sequences producing significant alignments: (Bits) Value seq6189 96.9 8e-17 >seq6189 Length=3579 Score = 96.9 bits (106), Expect = 8e-17 Identities = 432/674 (64%), Gaps = 14/674 (2%) Strand=Plus/Minus Query 1207 AGAAAAGAAACGCAAGCTTGATGACATCATCGTCGAAATGCGCCAACTCATCGAGGAAGG 1266 ||| ||||||||||| || || || | ||| || |||||| | |||| ||||| Sbjct 2630 AGAGAAGAAACGCAAACTCGACGATGTAATCAGAGAGATGCGCGCGATGCTCGATGAAGG 2571 Query 1267 --CCGTGAAGAGGAGTCTTTTAGAAAGTTTCCACGAAACCACCTAACGTATGGAGAAAAA 1324 || ||||| | || |||||||| ||| | | || | || |||||| Sbjct 2570 GAAAAAGATAAGGAG-CCTTCGCCAAGTTTCCCAGAAGCTATCTTCATTTCGGCGAAAAA 2512 Query 1325 ATCAAGGCTATGGTCATGCAAAAGCGTGACTTCTTCAAGAGCAAAGGAGATCCTCACATT 1384 ||||| || ||| | | ||| || |||||||||||| ||||||| | || |||||| Sbjct 2511 ATCAAAGCCATGCTTAACCAACGTCGCGACTTCTTCAAGTCCAAAGGACACCCACACATT 2452 Query 1385 TGGTTGTTTGGAAACCCTGGATCCGGCAAGTCAGCCATTCTTCAAGTAATCTACCCAGAA 1444 ||| | || |||||| || || ||||| ||||| || |||||||||| Sbjct 2451 TGGCTTAAAGGTCTGCCTGGAAGTGGTAAAAGTGCCATCCTTCAGGTGGTCTACCCAGAC 2392 Query 1445 TACTACAACAAGAACGTGGAGAACCGATTCTTCGATCGTT---ATCTTGACGGTCAACAC 1501 ||||||||||||| | |||| | ||| ||| | || | | ||| | || |||| Sbjct 2391 TACTACAACAAGAGCCTGGACACCCGTTTCATGGACCTATTCAATC-CCAAAGTGCACAC 2333 Query 1502 TCCCACGTGCTTCTACAAGATGTCGACCATAATGTCATGGATAATTTGGGCGTTCAATTC 1561 | ||| || | |||||||| || || | || | || || | || || || || Sbjct 2332 GCACAC--ACTCTTGCAAGATGTTGATCACAGAGTTGTCGAGAAGCTCGGTGTACAGTTT 2275 Query 1562 TTTAAGAGTGTGTGTGACGAAGCGGGCTACCCCATCGACGCCAAGTACAAGACCCCGCAG 1621 | || | | |||| ||||| | | || | ||| |||| |||| | |||| Sbjct 2274 CTCAAAACACTATGTGGCGAAGTTGTTTTTCCTTTGGACCAGAAGTTCAAGGCGGTGCAG 2215 Query 1622 ATCGC-GCGACTCACGATCCTCATCTCGTCCAACTTCACCATTGAGGATGTCGTTGCGGA 1680 || ||| | || || | | ||| ||||| || || || |||| | | || Sbjct 2214 CCTGCTAGGACGACGGTTCGTCGTTTTGTCGAACTTTACGATCGACAATGTTCTCCCAGA 2155 Query 1681 AGAGAT--CAAAGGGAGACGCGAAAACGTCACTGCGCTTCAACGTCGATTTTGGCAGGTA 1738 ||| || | | | ||| || || | | |||| | | ||||| || ||| | ||| Sbjct 2154 AGACATGCCTGACCG-GAC-AGAGAATCTGATTGCGTTGCGTCGTCGCTTCTGGGAAGTA 2097 Query 1739 AACATTCGTGACTTACTTCCTATTCTAGGTGTCAAGTTGTTGTCCAAGTATGAGATCACC 1798 ||| || ||| || | || || ||||||||| | | ||||| ||| | | Sbjct 2096 GACAGCCGCTCCTTTCTACAAATCCTCGGTGTCAAGCTACTTGATAAGTACGAGTTGAAG 2037 Query 1799 CAACTCAAGAAGGCGGGTAACCTCGACCCACGCAAGATCTTCCTCGCCTACGACTATCTT 1858 ||| |||||| | | ||| | || |||||||||||||| || | | |||||| | Sbjct 2036 TAACCCAAGAAAGAAAGCAACATGGATCCACGCAAGATCTTTATCACGTGGGACTATGGT 1977 Query 1859 CGTGATGTTCCAAC 1872 |||||| ||||||| Sbjct 1976 CGTGATATTCCAAC 1963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 11983106986025