Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509505.1_202013-12- 18] 6,724 sequences; 47,809,385 total letters Query= NC_022089.1 Length=3780 Score E Sequences producing significant alignments: (Bits) Value seq6104 205 2e-49 seq6105 102 2e-18 >seq6104 Length=1304 Score = 205 bits (226), Expect = 2e-49 Identities = 483/731 (66%), Gaps = 34/731 (5%) Strand=Plus/Minus Query 1205 GAAGAAAAGAAACGCAAGCTTGATGACATCATCGTCGAAATGCGCCAACTCATCGAGGAA 1264 || |||||||| | || ||||| || ||||| || ||||| | ||||| ||| Sbjct 1087 GAGGAAAAGAAGAGAAAACTTGACGATGTCATCAAGGAGATGCGAGGCATGATCGAAGAA 1028 Query 1265 GGCCGTGAAGAGGAGTCTTTTAGAAAGTTTCCACGAAACCACCTAACGTATGGAGAAAAA 1324 || || |||||||| | || | |||||||| |||||| || | || ||||||||||| Sbjct 1027 GGACGCGAAGAGGAAGCCTTCACCAAGTTTCCTCGAAACTACTTGACCTATGGAGAAAAG 968 Query 1325 ATCAAGGCTATGGTCATGCAAAAGCGTGACTTCTTCAAGAGCAAAGGAGATCCTCACATT 1384 | || |||||| || || |||||||| ||||||||||| || || |||||||| Sbjct 967 CTGAAAGCTATGATCTCACAGCGTCGTGACTTTTTCAAGAGCAACGGTGACCCTCACATC 908 Query 1385 TGGTTGTTTGGAAACCCTGGATCCGGCAAGTCAGCCATTCTTCAAGTAATCTACCCAGAA 1444 ||| | ||| | ||||| || |||||||| ||||| | || || ||||| || | Sbjct 907 TGGCTTACTGGTACTCCTGGTTCTGGCAAGTCTGCCATCTTGCAGGTCATCTATCCTGCG 848 Query 1445 TACTACAACAAGAACGTGGAGAACCGATTCTTCGATCGTTATCTTG--ACGGTCAA---- 1498 || ||||||||||| |||| ||||| |||||||| |||| | | ||| Sbjct 847 TATTACAACAAGAATCTGGACAACCGTTTCTTCGA-------CTTGTACCAGCCAAAAGT 795 Query 1499 -CACTCCCACGTGCTTCTACAAGATGTCGACCATAATGTCATGGATAATTTGGGCGTTCA 1557 ||| | ||| ||||||| ||||||||||| || | | || || ||||| Sbjct 794 GCACACGCACATGCTTCTTCAAGATGTCGATCACACGACGGTTGAAAAGTTGGG------ 741 Query 1558 ATTCTTTAAGAGTGTGTGTGACGAAGCGGGCTACCCCATCGACGCCAAGTACAAGACCCC 1617 ||| | ||||||||||| || | ||| | ||| ||||||||||| || Sbjct 740 --------AGACCATCTGTGACGAAGCTGGTTTCCCAGTTGACCAAAAGTACAAGACGCC 689 Query 1618 GCAGATCGCGCGACTCACGATCCTCATCTCGTCCAACTTCACCATTGAGGATGTCGTTGC 1677 ||| | || || ||| || | |||| |||||||||||||| | ||||| || | Sbjct 688 GCAACTGGCTCGTACCACTGTCTTGGTCTCTTCCAACTTCACCATCAACGATGTGATTCC 629 Query 1678 GGAAGAGATCAAAGGGAGACGC---GAAAACGTCACTGCGCTTCAACGTCGATTTTGGCA 1734 |||||| || || ||||| ||||| | || || || | ||||| || | | Sbjct 628 GGAAGACATGCCAG---GACGCAATGAAAATCTAACGGCTCTGCGTCGTCGCTTCTATGA 572 Query 1735 GGTAAACATTCGTGACTTACTTCCTATTCTAGGTGTCAAGTTGTTGTCCAAGTATGAGAT 1794 || ||| |||||| | | | || || || | ||| | |||| ||||| || | Sbjct 571 AGTGAACGTTCGTGTTCTTTTGCAGATACTCGGACTGAAGCTTCTGTCGAAGTACGAACT 512 Query 1795 CACCCAACTCAAGAAGGCGGGTAACCTCGACCCACGCAAGATCTTCCTCGCCTACGACTA 1854 | | | || | ||| || | || ||| ||| ||||| | | | || || Sbjct 511 GAACGGCTTGAAACGCGTGGGAAATCAAGATCCAACCAAACTCTTCATGTCGTGGGATTA 452 Query 1855 TCTTCGTGATGTTCCAACTGGTTTGCCATTGGCTACCGCGGAAGAGTACCAAAAAATCAT 1914 |||||| |||| ||||| | | ||| || || | || ||||| | ||||| Sbjct 451 CACTCGTGACATTCCCACTGGAGAGTCGTTGAAGACTGCCAAGGAATACCAGCAGATCAT 392 Query 1915 CAAGGATCACT 1925 ||||||||||| Sbjct 391 CAAGGATCACT 381 >seq6105 Length=1331 Score = 102 bits (112), Expect = 2e-18 Identities = 202/297 (68%), Gaps = 14/297 (5%) Strand=Plus/Minus Query 779 GTTCCTTTCCACCACGTCGACCGCGAGTGGGATGCCCGCTTCAACGTACCAACTCAAGAA 838 |||||||||||| | ||||| ||||||| || |||||||| ||||| || | ||| Sbjct 300 GTTCCTTTCCACACTATGGACCGTCAGTGGGACGCACGCTTCAATGTACCTACCGATGAA 241 Query 839 GACCTCGATGTTATCGTCGCTTC----CGTCAAGGCCGAAGT---CCAAGCTGGTCGGTT 891 || ||||| | | || |||| |||||| |||||| |||| || ||| Sbjct 240 GATCTCGAGGCTCTC----CTTCTCAATGTCAAGAGCGAAGTTGACCAA---GGAAAGTT 188 Query 892 CAAGTACGTTCTCGTCTCCGGTGTCGAAGTTGGCTCGCGTCCTTTCCAGGATGACTACCT 951 | | ||| |||||| || || || | || ||||||| ||| |||||||| Sbjct 187 CCAATACTGCCTCGTCGGTGGAGTAGAGATCGGTGATCGTCCTTACCAAACGGACTACCT 128 Query 952 CATCCGACATGTTCACCTCGCCCTTGTCTACAATAACCGAGTCACCAAGTCAAGCATTCT 1011 |||| || || ||| | || || || ||||||||||| ||| | ||| | | || Sbjct 127 CATCAAGCACGTGCACGTAGCTCTGGTGTACAATAACCGCGTCTCGAAGAACTCCGTGCT 68 Query 1012 CAAAAACCTGGGGGTCAAGCAAGGAAATGGGTATTACCTGGTCCCACGCAAACGCGA 1068 || || || |||||||||| ||||| |||||||| || ||||| || || || Sbjct 67 GAAGAATCTTCAAATCAAGCAAGGCAATGGCTATTACCTTGTTCCACGTAACCGTGA 11 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 11983118651700