Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509525.1_202013-12- 18] 6,791 sequences; 47,716,731 total letters Query= NC_022089.1 Length=3780 Score E Sequences producing significant alignments: (Bits) Value seq6110 253 5e-64 >seq6110 Length=11014 Score = 253 bits (280), Expect = 5e-64 Identities = 763/1174 (65%), Gaps = 68/1174 (6%) Strand=Plus/Minus Query 779 GTTCCTTTCCACCACGTCGACCGCGAGTGGGATGCCCGCTTCAACGTACCAACTCAAGAA 838 |||||||||||| | ||||| ||||||| || |||||||| ||||| || | ||| Sbjct 1825 GTTCCTTTCCACACTATGGACCGTCAGTGGGACGCACGCTTCAATGTACCTACCGATGAA 1766 Query 839 GACCTCGATGTTATCGTCGCTTCC----GTCAAGGCCGAAGT---CCAAGCTGGTCGGTT 891 || ||||| | | || |||| |||||| |||||| ||||| | ||| Sbjct 1765 GATCTCGAGGCTCTC----CTTCTCAATGTCAAGAGCGAAGTTGACCAAG---GAAAGTT 1713 Query 892 CAAGTACGTTCTCGTCTCCGGTGTCGAAGTTGGCTCGCGTCCTTTCCAGGATGACTACCT 951 | | ||| |||||| || || || | || ||||||| ||| |||||||| Sbjct 1712 CCAATACTGCCTCGTCGGTGGAGTAGAGATCGGTGATCGTCCTTACCAAACGGACTACCT 1653 Query 952 CATCCGACATGTTCACCTCGCCCTTGTCTACAATAACCGAGTCACCAAGTCAAGCATTCT 1011 |||| || || ||| | || || || ||||||||||| ||| | ||| | | || Sbjct 1652 CATCAAGCACGTGCACGTAGCTCTGGTGTACAATAACCGCGTCTCGAAGAACTCCGTGCT 1593 Query 1012 CAAAAACCTGGGGGTCAAGCAAGGAAATGGGTATTACCTGGTCCCACGCAAACGCGAGTT 1071 || || || |||||||||| ||||| |||||||| || ||||| || || || | Sbjct 1592 GAAGAATCTTCAAATCAAGCAAGGCAATGGCTATTACCTTGTTCCACGTAACCGTGATCT 1533 Query 1072 TCCTTACAGCGGTTGGAAAAAACATCATACCAAGACCGAAACCAAAGTGGATGCCG-CTT 1130 ||| | || |||| | ||||| |||||| | |||| ||| | | | | ||| Sbjct 1532 GCCTATCCAAGGCTGGATCGATCATCACACCAAGTCAAAAACGAAAATCAACGAGGACTT 1473 Query 1131 CTCTTTGCCTCTACGAGTACGGAATTCTACCAACCGACCG------TTTGGCAGC---AG 1181 | || || |||||||| | |||||| | ||| | | | || || Sbjct 1472 CAAGCTG----TATGAGTACGGCACTCTACCTGCTGACAAACCCAATATCTCTGCTCAAG 1417 Query 1182 TGGAATCCGCGCCCCGTTCAGCCGAAGAAAAGAAACGCAAGCTTGATGACATCATCGTCG 1241 || || | | || | || |||||||| | || ||||| || ||||| | Sbjct 1416 TGA---CCAAGA---GATCGCCAGAGGAAAAGAAGAGAAAACTTGACGATGTCATCAAGG 1363 Query 1242 AAATGCGCCAACTCATCGAGGAAGGCCGTGAAGAGGAGTCTTTTAGAAAGTTTCCACGAA 1301 | ||||| | ||||| ||||| || |||||||| | || | |||||||| |||| Sbjct 1362 AGATGCGAGGCATGATCGAAGAAGGACGCGAAGAGGAAGCCTTCACCAAGTTTCCTCGAA 1303 Query 1302 ACCACCTAACGTATGGAGAAAAAATCAAGGCTATGGTCATGCAAAAGCGTGACTTCTTCA 1361 || || | || ||||||||||| | || |||||| || || |||||||| |||| Sbjct 1302 ACTACTTGACCTATGGAGAAAAGCTGAAAGCTATGATCTCACAGCGTCGTGACTTTTTCA 1243 Query 1362 AGAGCAAAGGAGATCCTCACATTTGGTTGTTTGGAAACCCTGGATCCGGCAAGTCAGCCA 1421 ||||||| || || |||||||| ||| | ||| | ||||| || |||||||| |||| Sbjct 1242 AGAGCAACGGTGACCCTCACATCTGGCTTACTGGTACTCCTGGTTCTGGCAAGTCTGCCA 1183 Query 1422 TTCTTCAAGTAATCTACCCAGAATACTACAACAAGAACGTGGAGAACCGATTCTTCGATC 1481 | | || || ||||| || | || ||||||||||| |||| ||||| |||||||| Sbjct 1182 TCTTGCAGGTCATCTATCCTGCGTATTACAACAAGAATCTGGACAACCGTTTCTTCGA-- 1125 Query 1482 GTTATCTTG--ACGGTCAA-----CACTCCCACGTGCTTCTACAAGATGTCGACCATAAT 1534 |||| | | ||| ||| | ||| ||||||| ||||||||||| || | Sbjct 1124 -----CTTGTACCAGCCAAAAGTGCACACGCACATGCTTCTTCAAGATGTCGATCACACG 1070 Query 1535 GTCATGGATAATTTGGGCGTTCAATTCTTTAAGAGTGTGTGTGACGAAGCGGGCTACCCC 1594 | || || ||||| ||| | ||||||||||| || | ||| Sbjct 1069 ACGGTTGAAAAGTTGGG--------------AGACCATCTGTGACGAAGCTGGTTTCCCA 1024 Query 1595 ATCGACGCCAAGTACAAGACCCCGCAGATCGCGCGACTCACGATCCTCATCTCGTCCAAC 1654 | ||| ||||||||||| ||||| | || || ||| || | |||| |||||| Sbjct 1023 GTTGACCAAAAGTACAAGACGCCGCAACTGGCTCGTACCACTGTCTTGGTCTCTTCCAAC 964 Query 1655 TTCACCATTGAGGATGTCGTTGCGGAAGAGATCAAAGGGAGACGC---GAAAACGTCACT 1711 |||||||| | ||||| || ||||||| || || ||||| ||||| | || Sbjct 963 TTCACCATCAACGATGTGATTCCGGAAGACATGCCAG---GACGCAATGAAAATCTAACG 907 Query 1712 GCGCTTCAACGTCGATTTTGGCAGGTAAACATTCGTGACTTACTTCCTATTCTAGGTGTC 1771 || || | ||||| || | | || ||| |||||| | | | || || || | Sbjct 906 GCTCTGCGTCGTCGCTTCTATGAAGTGAACGTTCGTGTTCTTTTGCAGATACTCGGACTG 847 Query 1772 AAGTTGTTGTCCAAGTATGAGATCACCCAACTCAAGAAGGCGGGTAACCTCGACCCACGC 1831 ||| | |||| ||||| || | | | | || | ||| || | || ||| | Sbjct 846 AAGCTTCTGTCGAAGTACGAACTGAACGGCTTGAAACGCGTGGGAAATCAAGATCCAACC 787 Query 1832 AAGATCTTCCTCGCCTACGACTATCTTCGTGATGTTCCAACTGGTTTGCCATTGGCTACC 1891 || ||||| | | | || || |||||| |||| ||||| | | ||| || Sbjct 786 AAACTCTTCATGTCGTGGGATTACACTCGTGACATTCCCACTGGAGAGTCGTTGAAGACT 727 Query 1892 GCGGAAGAGTACCAAAAAATCATCAAGGATCACT 1925 || | || ||||| | |||||||||||||||| Sbjct 726 GCCAAGGAATACCAGCAGATCATCAAGGATCACT 693 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 11983109869675