Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pisi_20[genbank_20GCA_5F000751395.1_202014-07-22] 8,083 sequences; 58,815,051 total letters Query= NC_022089.1 Length=3780 Score E Sequences producing significant alignments: (Bits) Value seq1777 262 9e-67 >seq1777 Length=3174 Score = 262 bits (290), Expect = 9e-67 Identities = 681/1026 (66%), Gaps = 18/1026 (2%) Strand=Plus/Plus Query 890 TTCAAGTACGTTCTCGTCTCCGGTGTCGAAGTTGGCTCGCGTCCTTTCCAGGATGACTAC 949 ||| ||||||| || || ||| ||||| | ||| ||||| ||||| | || ||| Sbjct 917 TTCCAGTACGTCCTGGTGAGCGGCGTCGAGATCGGCGATCGTCCCTTCCAAGGAGATTAC 976 Query 950 CTCATCCGACATGTTCACCTCGCCCTTGTCTACAATAACCGAGTCACCAAGTCAAGCATT 1009 || ||| ||||| ||| |||| | |||| | ||||| ||| ||| ||||| | Sbjct 977 CTGATCAAGCATGTGCACTGCGCCTTCGTCTTCCCCAACCGGATCAGCAAATCAAGTCTA 1036 Query 1010 CTCAAAAACCTGGGGGTCAAGCAAGGAAATGGGTATTACCTGGTCCCACGCAAACGCGAG 1069 |||||| | ||||| ||||| || || || |||||||| || || || || Sbjct 1037 CTCAAACAACTGGGCATCAAGACTGGCAACGGCTATTACCTCTCTCCTCGTCGGCGTGAC 1096 Query 1070 TTTCCT-TACAGCGGTTGGAAAAAACATCATACCAAGACCGAAACCAAAGTGGATGCCGC 1128 | ||| | ||| || |||| | || || | |||||| | ||||| | | || Sbjct 1097 CTCCCTGTGCAG-GGATGGATCGATCACCACAAGAAGACCAAGACCAAGATCAA---CGA 1152 Query 1129 TTCTCTTTGCCTCTACGAGTACGGAATTCTACCAACCGAC-CGTTTGGCAGCAGTGGAAT 1187 | || | ||||| ||| | ||| ||| ||| |||| || |||| || || || Sbjct 1153 GACACTGTTCCTCTTCGAATCCGGTGTTCCCCCAGCCGATACGCCTGGCGCCATTG-AAC 1211 Query 1188 CCG-CGCCC--CGT--TCAGCCGAAGAAAAGAAACGCAAGCTTGATGACATCATCGTCGA 1242 | | || | || |||| ||||| ||||| || ||||| ||||||||||||| || Sbjct 1212 CTGTCGTCAAACGAAGTCAG--GAAGAGAAGAAGCGGAAGCTCAATGACATCATCGTGGA 1269 Query 1243 AATGCGCCAACTCATCGAGGAAGGCCGTGAAGAGGAGTCTTTTAGAAAGTTTCCACGAAA 1302 ||| | |||||||| ||||| || |||| | || ||||| || || || Sbjct 1270 GATGAAGGGGATGATCGAGGAGGGCCGAGAGAAGGAAGCGTTCGCCAAGTTCCCTCGCAA 1329 Query 1303 CCACCTAACGTATGGAGAAAAAATCAAGGCTATGGTCATGCAAAAGCGTGACTTCTTCAA 1362 | |||||||||||||||| || |||||||| ||||||| ||| |||| ||| |||||| Sbjct 1330 CTACCTAACGTATGGAGAGAAGATCAAGGCAATGGTCAGCCAACAGCGCAACTACTTCAA 1389 Query 1363 GAGCAAAGGAGATCCTCACATTTGGTTGTTTGGAAACCCTGGATCCGGCAAGTCAGCCAT 1422 || | || | || ||||| ||| | | || || || || |||||||| || || Sbjct 1390 GAATGATGGTCACCCACACATCTGGATTATGGGGTCTCCAGGCTCTGGCAAGTCTGCTAT 1449 Query 1423 TCTTCAAGTAATCTACCCAGAATACTACAACAAGAACGTGGAGAACCGATTCTTCGATCG 1482 ||| ||||| | |||||| | |||||||||||| || | | || |||||||| | Sbjct 1450 TCTCCAAGTCGTGTACCCAAAGTACTACAACAAGGACCTCAACTCTCGCTTCTTCGAACT 1509 Query 1483 TTATCTTGACGGTCAA--CACTCCCACGTGCTTCTACAAGATGTCGACCATAATGTCATG 1540 ||| | ||| | ||| | ||| ||| || |||||| | || ||| | | Sbjct 1510 CTATGAT--CGGGAGACGCACACGCACACGCTACTCCAAGATCTGGATCATGCGACCGTC 1567 Query 1541 GATAATTTGGGCGTTCAATTCTTTAAGAGTGTGTGTGACGAAGCGGGCTACCCCATCGAC 1600 || || | |||||||| ||| | |||| | || || ||||| || | ||| || ||| Sbjct 1568 GAGAAACTCGGCGTTCAGTTCCTCAAGACGATCTGCGATGAAGCTGGATTCCCGATTGAC 1627 Query 1601 GCCAAGTACAAGACCCCGCAGATCGCGCGACTCACGATCCTCATCTCGTCCAACTTCACC 1660 ||||||||| ||||||| || ||||| || | | | || || |||||| || Sbjct 1628 CAGAAGTACAAGTCCCCGCAACTCACGCGAACGACTGTATTGGTTTCCTCGAACTTCGCC 1687 Query 1661 ATTGAGGATGTCGTTGCGGAAGAGATCAAAGGGAGACGCGAAAACGTCACTGCGCTTCAA 1720 || | ||||| | | ||||| || || | ||| ||| | || |||| Sbjct 1688 ATCCACGATGTGCTCCCCGAAGATATGCGTGGTCGGAACGAGAACCTGCTGGCACTTCGT 1747 Query 1721 CGTCGATTTTGGCAGGTAAACATTCGTGACTTACTTCCTATTCTAGGTGTCAAGTTGTTG 1780 |||||||||| | || | | | ||||| || | |||| || ||||| | || Sbjct 1748 CGTCGATTTTATGAAGTCCATGTGGGAGACTTTCTGCGGCTTCTGGGCGTCAAACTACTG 1807 Query 1781 TCCAAGTATGAGATCACCCAACTCAAGAAGGCGGGTAACCTCGACCCACGCAAGATCTTC 1840 |||||||||||||||| ||| || | ||| || |||| || |||||||| | ||| Sbjct 1808 TCCAAGTATGAGATCAAGGGACTGAAAATGGCTGGCAACCAGGATCCACGCAAACTGTTC 1867 Query 1841 CTCGCCTACGACTATCTTCGTGATGTTCCAACTGGTTTGCCATTGGCTACCGCGGAAGAG 1900 || | ||||| ||||| | | || |||||| ||| || || || |||||| Sbjct 1868 ATCATGTGGGACTACCTTCGCAACATACCGACTGGTGAACCACTGAAGACAGCTGAAGAG 1927 Query 1901 TACCAA 1906 | |||| Sbjct 1928 TTCCAA 1933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 11982940520775