Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20sp._20Chile5_20[genbank_20GCA_5F001712635.1_202016- 08-24] 11,901 sequences; 84,445,542 total letters Query= NC_015586.1 Length=5819 Score E Sequences producing significant alignments: (Bits) Value seq2663 141 3e-30 seq11843 138 4e-29 >seq2663 Length=1053 Score = 141 bits (156), Expect = 3e-30 Identities = 107/126 (85%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 4469 CCGGGGTGTAGGGGCAGCGCCCCTACGGAAGCGCTTCACACGCGCTGGCGAGGTATCGGC 4528 |||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||| Sbjct 214 CCGGGGTGTAGGGGCAGCGCCCCTACGGAAACGCCTCACACGCGCTGGCGAGGCCTCGGC 155 Query 4529 CCCGGTACCGGTAGGACTGCTGCCGGCGGTTCGGCGTCGGGGCCAGCCATCGCCCCCGAT 4588 ||| |||| || ||||||| | | || |||||||| ||||||||||||||| ||| Sbjct 154 CCCTGTACTGGCAGGACTGACGTCACTGGATCGGCGTCAGGGCCAGCCATCGCCACCGCC 95 Query 4589 GACCGC 4594 || ||| Sbjct 94 GAACGC 89 >seq11843 Length=1551 Score = 138 bits (152), Expect = 4e-29 Identities = 319/469 (68%), Gaps = 34/469 (7%) Strand=Plus/Minus Query 5367 CCCGCCAACGGCACCCCAAGGCCGCTGGCGGGTTTCCTTGGGGCTTGGGGTAGGGGAACA 5426 ||||||| |||||||||||||||||||||||||| |||||||||||||| ||||| | Sbjct 1188 CCCGCCACCGGCACCCCAAGGCCGCTGGCGGGTTCTCTTGGGGCTTGGGG-AGGGGTA-- 1132 Query 5427 GGGATGATCGATCCGCTCATTACCTTCGCGCTGCTGGCCGCCATCGTGGCCGTGTCCATT 5486 ||| || || | || || | || |||||||| |||| |||||||| | Sbjct 1131 GGGCACATGGACGCACTTGTTCTCGCCGTGCTGCTGGGGTGTATCGCAGCCGTGTCGTTG 1072 Query 5487 GGCGGCGCTCGCATCGTTTCGTGGTTGCTCGACCGGCGTGAGTACACCGCCGCGCAGCAG 5546 || || |||| | |||| | || ||||||| | | |||| | | ||| Sbjct 1071 GGGTTAGCCAAATTCGTGACCTGGTGTGTTGATCGGCGTGCGCTCTCCGCTGGTC-GCA- 1014 Query 5547 CTGC--GCGAA------------GCCCAGG---TCATCGCACT-CGCGCGGGCCGAGATT 5588 |||| ||||| ||||||| || ||| || ||| || || || Sbjct 1013 CTGCACGCGAAAGCCAGTTTGTTGCCCAGGCGGTCGTCGACCTTCGC-CGCATGGAAATC 955 Query 5589 GCGGCCACGAAGCGCGGTGATCTGCTCGCTGCCGCTGAGCTGGCCGAAGCCCAGGAGCGA 5648 | ||||| || ||||| | |||||||| || || || || || |||| |||||||| Sbjct 954 GAAGCCACCAAACGCGGCAACCTGCTCGCCGCTGCCGAACTCGCTGAAGAGCAGGAGCGC 895 Query 5649 GTCGCATGAGCA----TCCATACCTTTGCCGCCGAACTTGCGGAGGCCGATATGGGCCTT 5704 | |||||||||| ||| | | ||||||| |||| | |||| ||||||||| ||| Sbjct 894 GCCGCATGAGCAGGTTTCCCT-CATTTGCCG---AACTGGTGGAGTTCGATATGGGTCTT 839 Query 5705 TTCGCATGCGCTGCGCTGATTGTCGCTTGCCTCGGCAGCGCAATAGCT-TCAATCGTGAT 5763 | ||||| ||||| || | || ||| || || || | || ||| || |||||||| Sbjct 838 GCGGGGTGCGCCGCGCTCATCGCCGTTTGGCTGGG-AGTGGCATTGCTCTCCATCGTGAT 780 Query 5764 TGAGCAGTCATGGCTTGCGATCCGTCGCCTGTGGAAGCTCTGGAAGGGC 5812 ||||||| | ||||| || | |||| | || |||| |||||||| Sbjct 779 TGAGCAGGCGTGGCTGGCACTTCGTCACTGGTTCAAGCGGCGGAAGGGC 731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 18506390761560