Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pilasporangium_20apinafurcum_20[genbank_20GCA_5F001600495.1_202016- 03-01] 280 sequences; 37,444,745 total letters Query= NC_022089.1 Length=3780 Score E Sequences producing significant alignments: (Bits) Value seq185 104 6e-19 >seq185 Length=4013 Score = 104 bits (114), Expect = 6e-19 Identities = 256/382 (67%), Gaps = 6/382 (2%) Strand=Plus/Plus Query 1205 GAAGAAAAGAAACGCAAGCTTGATGACATCATCGTCGAAATGCGCCAACTCATCGAGGAA 1264 ||||| ||||| || || | ||||| |||||| | ||||| | || | || || Sbjct 2280 GAAGAGAAGAAGCGAAAATTAGATGATATCATCATTGAAATCAAGGAGCTACTTGAAGAT 2339 Query 1265 GGCCGTGAAGAGGAGTCTTTTAGAAAGTTTCCACGAAACCACCTAACGTATGGAGAAAAA 1324 | ||||| ||| | || | || || ||| ||||| | || | |||||| ||||| Sbjct 2340 AACAAGGAAGACGAGGCGTTCAAGAAATTCCCAAGAAACTATCTCATCTATGGACAAAAA 2399 Query 1325 ATCAAGGCTATGGTCATGCAAAAGCGTGACTTCTTCAAGAGCAAAGGAGATCCTCACATT 1384 |||||||| ||| | | ||||| ||||| ||||| | || ||||||||||||||| Sbjct 2400 ATCAAGGCAATGATGGTCCAAAAACGTGATTTCTTTGAATTGAATGGAGATCCTCACATT 2459 Query 1385 TGGTTGTTTGGAAACCCTGGATCCGGCAAGTCAGC-CATTCTTCAA-GTAATCTACCCAG 1442 ||| | | ||| | || |||||| ||| |||| ||||| | | || ||| Sbjct 2460 TGGATTTACGGACTAGCAGGCAAAGGCAAG--AGCGCATTGTTCAATTTCGTGTATCCAA 2517 Query 1443 AATACTACAACAAGAACGTGGAGAACCGATTCTTCGATC-GTTATCTTGACGGTCAACAC 1501 | | ||||||||| |||| | | || ||||||| |||| | || ||| || Sbjct 2518 AGAGTTTCAACAAGAATTTGGACAGCAAGTTTTTCGATCTGTTA-CGTGCTACTCATCAT 2576 Query 1502 TCCCACGTGCTTCTACAAGATGTCGACCATAATGTCATGGATAATTTGGGCGTTCAATTC 1561 | || | || || || || || || ||| | || || ||||| || |||||| Sbjct 2577 ACGCATATTCTACTCAGTGACGTGGATCACGCCGTCGTAGAGAAATTGGGTGTACAATTC 2636 Query 1562 TTTAAGAGTGTGTGTGACGAAG 1583 |||||||| | |||||||||| Sbjct 2637 TTTAAGAGCATTTGTGACGAAG 2658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 11983963299000