Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= NC_022089.1 Length=3780 Score E Sequences producing significant alignments: (Bits) Value seq494 134 3e-28 >seq494 Length=1635 Score = 134 bits (148), Expect = 3e-28 Identities = 414/635 (65%), Gaps = 4/635 (1%) Strand=Plus/Plus Query 1208 GAAAAGAAACGCAAGCTTGATGACATCATCGTCGAAATGC-GCCAACTCATCGAGGAAGG 1266 || ||||| | ||| | ||||| || ||| | |||||| | | | | || || ||||| Sbjct 422 GAGAAGAAGAGGAAGTTGGATGAAATTATCATTGAAATGAAGACTA-TGATAGAAGAAGG 480 Query 1267 CCGTGAAGAGGAGTCTTTTAGAAAGTTTCCACGAAACCACCTAACGTATGGAGAAAAAAT 1326 || ||| |||| | ||| |||||||| | ||| || ||||||||||| ||| | Sbjct 481 CCATGAGAAGGAAGCGTTTGCCAAGTTTCCTAGGAACTTTCTTACGTATGGAGAGAAACT 540 Query 1327 CAAGGCTATGGTCATGCAAAAGCGTGACTTCTTCAAGAGCAAAGGAGATCCTCACATTTG 1386 || || ||| ||| |||||| | || |||||||| | ||| | || || ||||| Sbjct 541 AAAAGCAATGATCAATCAAAAGAGAGATTTCTTCAAATCTAGCGGACACCCACATATTTG 600 Query 1387 GTTGTTTGGAAACCCTGGATCCGGCAAGTCAGCCATTCTTCAAGTAATCTACCCAGAATA 1446 | | || ||||| ||||||||||| || | ||||| ||||| || || Sbjct 601 GATTACCGGTCCACCTGGCAGTGGCAAGTCAGCAATCTTACAAGTTATCTATCCGACGTA 660 Query 1447 CTACAACAAGAACGTGGAGAACCGATTCTTCGATCGTTATCTTGAC-GGTCAACACTCCC 1505 ||||||||| | | | || || |||||||||| || || | | | || ||| Sbjct 661 TTACAACAAGGATCTTAACAATCGGTTCTTCGATCTCTA-CTCGCCAGAGTTTCATACCC 719 Query 1506 ACGTGCTTCTACAAGATGTCGACCATAATGTCATGGATAATTTGGGCGTTCAATTCTTTA 1565 | || || |||| ||| | || || | ||| || || | || ||||||||| | | Sbjct 720 ATGTTCTCTTACAGGATCTGGATCACCAGACCATTGAAAAGCTCGGTGTTCAATTCATCA 779 Query 1566 AGAGTGTGTGTGACGAAGCGGGCTACCCCATCGACGCCAAGTACAAGACCCCGCAGATCG 1625 | | |||||||||||||||| | ||| || || |||||||| || || || | Sbjct 780 AAACCTTGTGTGACGAAGCGGGATTCCCTATTGATCAGAAGTACAAAACGCCTCAACTTA 839 Query 1626 CGCGACTCACGATCCTCATCTCGTCCAACTTCACCATTGAGGATGTCGTTGCGGAAGAGA 1685 | ||| ||| || ||||||| || ||| || | || || | | ||||| | Sbjct 840 CACGAACAACGGCACTTGTCTCGTCTAATTTCGGAATACAAGACGTTCTACCCGAAGACA 899 Query 1686 TCAAAGGGAGACGCGAAAACGTCACTGCGCTTCAACGTCGATTTTGGCAGGTAAACATTC 1745 | || || ||||| | ||||| | | || || || | |||| || || Sbjct 900 TGCCTGGTCGAAATGAAAATCTTGCTGCGTTACGTCGACGGTTCTTCGAGGTTAATGTTA 959 Query 1746 GTGACTTACTTCCTATTCTAGGTGTCAAGTTGTTGTCCAAGTATGAGATCACCCAACTCA 1805 ||||||| || | | || || ||||| || | || ||||| || || || ||| | Sbjct 960 GTGACTTTCTGCGACTGCTCGGACTCAAGCTGCTCTCGAAGTACGAAATTACGGGACTAA 1019 Query 1806 AGAAGGCGGGTAACCTCGACCCACGCAAGATCTTC 1840 || |||||||| || ||||||||| | ||| Sbjct 1020 AGCTTAAAGGTAACCTGGATCCACGCAAGCTATTC 1054 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 11983585540850