Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_001331.1 Length=7349 Score E Sequences producing significant alignments: (Bits) Value seq19017 217 7e-53 seq26587 132 2e-27 seq28171 80.6 1e-11 >seq19017 Length=720 Score = 217 bits (240), Expect = 7e-53 Identities = 359/512 (70%), Gaps = 6/512 (1%) Strand=Plus/Minus Query 4621 TGGTCGAGTTCGCCGGCTACGAATGGTCCAAGGGCCGTATCGGTCGCGACTCTGGCTATC 4680 ||||||| ||||||| | | ||| | ||||||| || | ||||||||||| | Sbjct 683 TGGTCGAATTCGCCGACCAGATCTGGCACTCGGGCCGTGTCAGCAAGGACTCTGGCTACC 624 Query 4681 AGTACCGCCTGCAGAACGCCGAAATGGGCCTGATCCTGCTGATCAAGAACCACAACATCA 4740 ||||| || |||||||| || | ||| | ||||| || | |||||| |||| || Sbjct 623 AGTACAAACTCCAGAACGCTGACCTCGGCATCATCCTCTTGGTGAAGAACTTCAACTCCA 564 Query 4741 AGGTCGACACCATTGGCTCGCACCTCAAGATCGAGGTGTCGCCCCACGCCATTGACGGC- 4799 || ||||| |||| ||| | ||||| || |||||||| |||||||| ||||| |||| | Sbjct 563 AGATCGACGCCATCGGCGCACACCTGAAAATCGAGGTCTCGCCCCATGCCATCGACGCCC 504 Query 4800 -GCCGACCCGCGTATCCTCCAGGG-CGTGCTGGATGACCTGGCCGCAGCGGTGCTGAGTC 4857 | || || | | ||| |||| ||| |||| || ||| | || || || | | Sbjct 503 TGTCG-CCTGAGCG-CCTGCAGGATCGTA-TGGACTACTACGCCTCGGCAGTCCTTACCC 447 Query 4858 ACTGCGAGACCAACCAAGCAGCTGTGCATATCGCGCTGGATGTGCAGGGCTGGACGCCTC 4917 | |||| | |||||| || || || |||| |||||| |||| || |||| || | Sbjct 446 ATCGCGAAATCAACCAGTGCGCCGTCCACCTCGCCCTGGATCTGCAAGGTTGGAAACCGC 387 Query 4918 CGGCTGATCTCGTTGATCGCATGCACTGCCGCTCGCGTCGGGTACGGCAAATCAGTGGGA 4977 | | ||| | || | ||||||||| ||||| | || ||| | ||| ||| | Sbjct 386 CCGTGGATTTGGTGGCTCGCATGCATTGCCGTGCACGCACCCAACGCGATATCTCTGGCA 327 Query 4978 TCGAGCGGATCGAGTTCGACGGCAACGCCTCGGTCTACGGGCGTGGCGAGACGTACATGT 5037 || | ||| | | | ||| || |||||| || ||||| || | ||||| Sbjct 326 TCAACGAAATCAACTGGACCACCAAGTCCAGCACCTACGGTCGCGGCGAAACCTTCATGT 267 Query 5038 TCGGCTCGGCCAACGGCCTGCAACTGTCAATCTATAACAAGACCCTCCAGGCTCGGGCCA 5097 |||| ||||||| |||| |||||||| | ||||| ||||||||| || || ||||| | Sbjct 266 TCGGTTCGGCCAGCGGCGTGCAACTGGCCATCTACAACAAGACCGAGCAAGCCCGGGCAA 207 Query 5098 CCGACAAGCTCGACTATTGGGAAAGCGTGTGG 5129 |||||||||||||||| ||||||||||||||| Sbjct 206 CCGACAAGCTCGACTACTGGGAAAGCGTGTGG 175 >seq26587 Length=449 Score = 132 bits (146), Expect = 2e-27 Identities = 230/332 (69%), Gaps = 8/332 (2%) Strand=Plus/Plus Query 4621 TGGTCGAGTTCGCCGGCTACGAATGGTCCAAGGGCCGTATCGGTCGCGACTCTGGCTATC 4680 ||||||||||||||||| | ||| | || ||| || | ||||||||||| | Sbjct 34 TGGTCGAGTTCGCCGGCCAGATCTGGCACTCAGGTCGTGTCAGCAAAGACTCTGGCTACC 93 Query 4681 AGTACCGCCTGCAGAACGCCGAAATGGGCCTGATCCTGCTGATCAAGAACCACAACATCA 4740 ||||| || |||||||| || | ||| | |||||| || | |||||| |||| || Sbjct 94 AGTACAAGCTCCAGAACGCTGACCTCGGCATCATCCTGTTGGTGAAGAACTTCAACGCCA 153 Query 4741 AGGTCGACACCATTGGCTCGCACCTCAAGATCGAGGTGTCGCCCCACGCCATTGACGGCG 4800 || | ||| |||| ||| | ||| | || ||||| || |||||||| ||||| ||| ||| Sbjct 154 AGATTGACGCCATCGGCGCCCACTTGAAAATCGAAGTCTCGCCCCATGCCATCGAC-GCG 212 Query 4801 CCGACCC----GCGTATCCTCCAGGGCGTGCTGGATGACCTGGCCGCAGCGGTGCTGAGT 4856 | | | | ||| ||| || | | |||| | || | || || |||| Sbjct 213 CTGTCGCCTGAGCG---CCTGCAAGACCGCATGGACTATTACGCTTCGGCTGTCCTGACC 269 Query 4857 CACTGCGAGACCAACCAAGCAGCTGTGCATATCGCGCTGGATGTGCAGGGCTGGACGCCT 4916 || | || | ||||||| || || ||| ||||| ||||| |||||||||||| || Sbjct 270 CATAGAGAAATCAACCAATGCGCCGTCCATCTCGCGTTGGATCTGCAGGGCTGGAAACCG 329 Query 4917 CCGGCTGATCTCGTTGATCGCATGCACTGCCG 4948 || | ||||| || | |||||||||||||| Sbjct 330 CCTGTGGATCTGGTGGCCCGCATGCACTGCCG 361 >seq28171 Length=406 Score = 80.6 bits (88), Expect = 1e-11 Identities = 53/59 (90%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 7035 CTCGGCGGCAAGAGCGGGATGACAAGGGCAGAGCCCTTGGTGTTAACAGACTTGAAAGT 7093 |||||||||||||| ||||||||||||||| ||||||||||| ||||||||| || || Sbjct 2 CTCGGCGGCAAGAGTGGGATGACAAGGGCAAGGCCCTTGGTGTGAACAGACTTCAACGT 60 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 23392243718548