Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_001332.1 Length=6744 Score E Sequences producing significant alignments: (Bits) Value seq904 96.9 1e-16 >seq904 Length=10185 Score = 96.9 bits (106), Expect = 1e-16 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 114 TTATGATGAATCAAAAAACGGCCTTATTGTTTTAGATGAGTGTGGCACGTGGTTTAATTC 173 |||||||||||| ||| ||| |||| ||| | ||||| || ||||||||||||||||| Sbjct 1889 TTATGATGAATCTAAATTTGGCGTTATGGTTCTGGATGAATGCGGCACGTGGTTTAATTC 1830 Query 174 CCGCAACTGGAGTGATAAAAGTCGCCAGCCTGTTATAGACTGGTTTTTACATGCCCGTAA 233 ||||||||| |||||||| || || | | || | | || ||| || || Sbjct 1829 TCGCAACTGGCAGGATAAAAGCCGTAAGGAACTCAATGATTACCTGTTGCATTTGCGCAA 1770 Query 234 ATTAGGCTGGGATGTAATTTTTATTATTCAGGATATTTCCCTGATGGATAAGCAGGCACG 293 || || ||||| | ||| ||||| || |||||||| || ||||| ||||| || Sbjct 1769 GTTGGGTTGGGACCTTTATTTAATTATCCAAGATATTTCTATGCTGGATTCACAGGCCCG 1710 Query 294 CGAGGCTTTAGCCGAACATGTTGTTTATTGCCGTCGATTAGATAAATT 341 || || | | || | | | ||| ||| ||||| |||||||| Sbjct 1709 TGATGCGATTGGTGAGCTTCTGGTTACGTGCAAGCGATTGGATAAATT 1662 Score = 96.9 bits (106), Expect = 1e-16 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 114 TTATGATGAATCAAAAAACGGCCTTATTGTTTTAGATGAGTGTGGCACGTGGTTTAATTC 173 |||||||||||| ||| ||| |||| ||| | ||||| || ||||||||||||||||| Sbjct 8199 TTATGATGAATCTAAATTTGGCGTTATGGTTCTGGATGAATGCGGCACGTGGTTTAATTC 8140 Query 174 CCGCAACTGGAGTGATAAAAGTCGCCAGCCTGTTATAGACTGGTTTTTACATGCCCGTAA 233 ||||||||| |||||||| || || | | || | | || ||| || || Sbjct 8139 TCGCAACTGGCAGGATAAAAGCCGTAAGGAACTCAATGATTACCTGTTGCATTTGCGCAA 8080 Query 234 ATTAGGCTGGGATGTAATTTTTATTATTCAGGATATTTCCCTGATGGATAAGCAGGCACG 293 || || ||||| | ||| ||||| || |||||||| || ||||| ||||| || Sbjct 8079 GTTGGGTTGGGACCTTTATTTAATTATCCAAGATATTTCTATGCTGGATTCACAGGCCCG 8020 Query 294 CGAGGCTTTAGCCGAACATGTTGTTTATTGCCGTCGATTAGATAAATT 341 || || | | || | | | ||| ||| ||||| |||||||| Sbjct 8019 TGATGCGATTGGTGAGCTTCTGGTTACGTGCAAGCGATTGGATAAATT 7972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 21457017757968