Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_015586.1 Length=5819 Score E Sequences producing significant alignments: (Bits) Value seq1351 214 7e-52 >seq1351 Length=7656 Score = 214 bits (236), Expect = 7e-52 Identities = 281/382 (74%), Gaps = 28/382 (7%) Strand=Plus/Minus Query 4469 CCGGGGTGTAGGGGCAGCGCCCCTACGGAAGCGCTTCACACGCGCTGGCGAGGTATCGGC 4528 |||||||||||||||||||||||||||||| ||| ||| ||||||||||||| ||||| Sbjct 4382 CCGGGGTGTAGGGGCAGCGCCCCTACGGAAACGCCTCATCCGCGCTGGCGAGGCCTCGGC 4323 Query 4529 CCCGGTACCGGTAGGACTGCTGCCGGCGGTTCGGCGTCGGGGCCAGCCATCGCCCCCGAT 4588 |||| | | ||||||||||| || || || |||||||| |||||||||||| || ||| Sbjct 4322 CCCGATCCTGGTAGGACTGCCGCTGGTGGCTCGGCGTCAGGGCCAGCCATCACCACCGCC 4263 Query 4589 GACCGCCTTTCTCGGCGATGTGCCAAGGC------ATCG--GAGAGGTTCACCACGCTGG 4640 |||||| || || || ||| | | || | || || || ||| | Sbjct 4262 GACCGCTGTTTGCGCCGGCTCACCACGTCCAGCAGATTGACGACAGTGGCAGGACGATCC 4203 Query 4641 CG-GCGT-TGAAGGACAAGGGTTTCCGTGTTTTG--CCGT-------TTGCGCGG----- 4684 | ||| || || || ||| || || ||| | | | |||| | Sbjct 4202 CACGCGACTGCAGCACGTTTGTTCCCACGTATTGAGCAATGGGAATCTGGCGCCGAGCGT 4143 Query 4685 -CCGCTCTCCATCATCCGCCGCCATTCCTGCGCCTGCGCAG-CAGTGAGCGACAGCCAGG 4742 | ||| ||||||||||| |||||||||||||| || |||| | ||||| |||||||||| Sbjct 4142 GCAGCT-TCCATCATCCGGCGCCATTCCTGCGCTTG-GCAGGCGGTGAGTGACAGCCAGG 4085 Query 4743 CCAGATCTTCGGGCAGCAACTCGCGGCCTTCGGGTGTGACCAGTCGGCCAGCCTTAAACG 4802 ||||||||||||| |||| |||||||||||||||||||| ||| || || | || | Sbjct 4084 CCAGATCTTCGGGAAGCAGCTCGCGGCCTTCGGGTGTGATCAGGCGATCACCGAGGAAAG 4025 Query 4803 AAAAACCGGCCCAAGGGCCGGT 4824 |||||||||||||||||||||| Sbjct 4024 AAAAACCGGCCCAAGGGCCGGT 4003 Score = 127 bits (140), Expect = 8e-26 Identities = 102/123 (83%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 4472 GGGTGTAGGGGCAGCGCCCCTACGGAAGCGCTTCACACGCGCTGGCGAGGTATCGGCCCC 4531 ||| || |||||||||||||| ||||||||| |||||||||||||||||||||||||||| Sbjct 5131 GGGCGTGGGGGCAGCGCCCCTGCGGAAGCGCCTCACACGCGCTGGCGAGGTATCGGCCCC 5072 Query 4532 GGTACCGGTAGGACTGCTGCCGGCGGTTCGGCGTCGGGGCCAGCCATCGCCCCCGATGAC 4591 |||| |||||| |||| ||| ||| ||||||| ||||||| |||| ||| || Sbjct 5071 GGTAAGGGTAGGGCTGCCGCCACCGGAACGGCGTCAATTCCAGCCAACGCCACCGCCGAA 5012 Query 4592 CGC 4594 ||| Sbjct 5011 CGC 5009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 18501605484840