Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012-
03-13] 35,539 sequences; 64,332,776 total letters
Query= NC_021562.1
Length=8555
Score E
Sequences producing significant alignments: (Bits) Value
seq904 82.4 4e-12
>seq904
Length=10185
Score = 82.4 bits (90), Expect = 4e-12
Identities = 140/201 (70%), Gaps = 8/201 (4%)
Strand=Plus/Minus
Query 5159 ATCGTGCTTGATGAGTGCGGTACTTGGTTTAACTCTCGCACGTGGAACGATAAGAACCGA 5218
|| || || ||||| ||||| || |||||||| ||||||| ||| | ||||| | |||
Sbjct 1864 ATGGTTCTGGATGAATGCGGCACGTGGTTTAATTCTCGCAACTGGCAGGATAAAAGCCGT 1805
Query 5219 CAAGCCTTACTCGATAGATTT----TTGCATATCCGCAAATTGGGATGGGATGTGATTTT 5274
| | |||| || |||| |||||| | ||||| ||||| ||||| | |||
Sbjct 1804 AAGGA---ACTCAAT-GATTACCTGTTGCATTTGCGCAAGTTGGGTTGGGACCTTTATTT 1749
Query 5275 CATCGTTCAGAATATTTCAATGGTCGATAAACAAGCCCGTGAGGGTCTTGCTGAGCACGT 5334
|| | || ||||||| ||| | ||| ||| |||||||| | ||| ||||| |
Sbjct 1748 AATTATCCAAGATATTTCTATGCTGGATTCACAGGCCCGTGATGCGATTGGTGAGCTTCT 1689
Query 5335 TGTTCACTGCAAGCGATTAGA 5355
||| ||||||||||| ||
Sbjct 1688 GGTTACGTGCAAGCGATTGGA 1668
Score = 82.4 bits (90), Expect = 4e-12
Identities = 140/201 (70%), Gaps = 8/201 (4%)
Strand=Plus/Minus
Query 5159 ATCGTGCTTGATGAGTGCGGTACTTGGTTTAACTCTCGCACGTGGAACGATAAGAACCGA 5218
|| || || ||||| ||||| || |||||||| ||||||| ||| | ||||| | |||
Sbjct 8174 ATGGTTCTGGATGAATGCGGCACGTGGTTTAATTCTCGCAACTGGCAGGATAAAAGCCGT 8115
Query 5219 CAAGCCTTACTCGATAGATTT----TTGCATATCCGCAAATTGGGATGGGATGTGATTTT 5274
| | |||| || |||| |||||| | ||||| ||||| ||||| | |||
Sbjct 8114 AAGGA---ACTCAAT-GATTACCTGTTGCATTTGCGCAAGTTGGGTTGGGACCTTTATTT 8059
Query 5275 CATCGTTCAGAATATTTCAATGGTCGATAAACAAGCCCGTGAGGGTCTTGCTGAGCACGT 5334
|| | || ||||||| ||| | ||| ||| |||||||| | ||| ||||| |
Sbjct 8058 AATTATCCAAGATATTTCTATGCTGGATTCACAGGCCCGTGATGCGATTGGTGAGCTTCT 7999
Query 5335 TGTTCACTGCAAGCGATTAGA 5355
||| ||||||||||| ||
Sbjct 7998 GGTTACGTGCAAGCGATTGGA 7978
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 27249900757324
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |