Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_021569.1 Length=7069 Score E Sequences producing significant alignments: (Bits) Value seq1351 500 4e-138 >seq1351 Length=7656 Score = 500 bits (554), Expect = 4e-138 Identities = 324/355 (91%), Gaps = 0/355 (0%) Strand=Plus/Minus Query 5840 CAGCGCGACATCGTGGAGTTTCGCGCGTCAGGCGGCGGGCAAGTACTCGACCGATTCACC 5899 ||||||||||| ||||||||||| || | |||||||| || || || || ||||||||| Sbjct 6766 CAGCGCGACATTGTGGAGTTTCGGGCTACGGGCGGCGGCCAGGTGCTTGATCGATTCACC 6707 Query 5900 ACTGAGCAGCTGTGGGCGCTGGGCTGGTCTGTCAAGCGAACCGAATTCGGCGTGTTACTG 5959 ||||||||| ||||||||||||| ||||| || || || |||||||| |||||| | ||| Sbjct 6706 ACTGAGCAGTTGTGGGCGCTGGGGTGGTCGGTTAAACGCACCGAATTTGGCGTGCTGCTG 6647 Query 5960 AGCGCTAAGGGGCATGAGATTATCGCCACGACTTGGCCCGTGGACCCGTTTGGCGAGCAG 6019 |||||||||||||| ||||| || ||||||||||||||||| |||||||||||||||||| Sbjct 6646 AGCGCTAAGGGGCACGAGATCATTGCCACGACTTGGCCCGTAGACCCGTTTGGCGAGCAG 6587 Query 6020 TCCGATGCTACGACCGCGCGCATAAAGGCTGCGGCGGGGTCGCCTGTGACGAGCGCGAGC 6079 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 6586 TCCGATGCTACGACCGCGCGCATAAAGGCTGCGGCGGGGTCGCCTGTGACGAGCGCGAGC 6527 Query 6080 GAGACACAGCCGACCACCGCCGCGGCGAACGGGAGCACCCTAATTGCAGTTGGGAAGCGC 6139 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 6526 GAGACACAGCCGACCACCGCCGCGGCGAACGGGAGCACCCTAATTGCAGTTGGGAAGCGC 6467 Query 6140 CCCTTGGGCACGTTCCCAGAGACGCCGCCATACCCGGCGAGCTTCTGATTTTCGT 6194 ||||||||||||||||| |||||||| || || ||||| ||||||| | || ||| Sbjct 6466 CCCTTGGGCACGTTCCCGGAGACGCCTCCGTATCCGGCAAGCTTCTAAATTGCGT 6412 Score = 172 bits (190), Expect = 2e-39 Identities = 282/411 (69%), Gaps = 39/411 (9%) Strand=Plus/Minus Query 6608 GGCGAATGGCTGCGCTGCCGTGAGCACTGAACCGGGGTGTAGGGGCAGCGCCCCTACGGA 6667 |||| ||| |||||||||| ||||| ||| ||||||||||||||||||||||||||||| Sbjct 4413 GGCGGCTGGTTGCGCTGCCGGGAGCAGTGATCCGGGGTGTAGGGGCAGCGCCCCTACGGA 4354 Query 6668 AGCGCCTCACACGCGCTGGTAAGGTCTCGGCCCCGGCGCCGGCAGGACACCCGCAACAGG 6727 | ||||||| |||||||| ||| |||||||||| | || ||||| |||| || Sbjct 4353 AACGCCTCATCCGCGCTGGCGAGGCCTCGGCCCCGATCCTGGTAGGACTGCCGCTGGTGG 4294 Query 6728 ATCGGCGTCAGGACCAGCCATCACCGTGGAAGACCGCTTTGCGCGGCGTTGTGCGACCTC 6787 ||||||||||| |||||||||||| | ||||||| | ||| || | || || Sbjct 4293 CTCGGCGTCAGGGCCAGCCATCACCACCGCCGACCGCTGTTTGCGCCGGCTCACCACGTC 4234 Query 6788 GGCCAGGTCAACGA---TGCCCGCACG------CCCGAATG--GC-CGTTTCTGACCACC 6835 ||| | |||| || | | ||| | ||| || || ||||| | |||| Sbjct 4233 CAGCAGATTGACGACAGTGGCAGGACGATCCCACGCGACTGCAGCACGTTTGTTCCCACG 4174 Query 6836 T---------------------------CGGGCAATCTCCATCATCCGGCGCCATTCCTG 6868 | || ||| ||||||||||||||||||||||| Sbjct 4173 TATTGAGCAATGGGAATCTGGCGCCGAGCGTGCAGCTTCCATCATCCGGCGCCATTCCTG 4114 Query 6869 CGCCTGTGCGGCCAGCAGGGACAGCCATGCAAGGTCCTGCGGTTCCAGCTCGCGGCCTTC 6928 ||| || ||| || |||||||| || || || | || ||||||||||||||| Sbjct 4113 CGCTTGGCAGGCGGTGAGTGACAGCCAGGCCAGATCTTCGGGAAGCAGCTCGCGGCCTTC 4054 Query 6929 GGGGGTGACCAGTCGGCCAGCCTTAAACGAAAAACCGGCCCAGGGGCCGGT 6979 ||| |||| ||| || || | || |||||||||||||| |||||||| Sbjct 4053 GGGTGTGATCAGGCGATCACCGAGGAAAGAAAAACCGGCCCAAGGGCCGGT 4003 Score = 102 bits (112), Expect = 4e-18 Identities = 86/106 (81%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 6642 GGGTGTAGGGGCAGCGCCCCTACGGAAGCGCCTCACACGCGCTGGTAAGGTCTCGGCCCC 6701 ||| || |||||||||||||| ||||||||||||||||||||||| |||| |||||||| Sbjct 5131 GGGCGTGGGGGCAGCGCCCCTGCGGAAGCGCCTCACACGCGCTGGCGAGGTATCGGCCCC 5072 Query 6702 GGCGCCGGCAGGACACCCGCAACAGGATCGGCGTCAGGACCAGCCA 6747 || || ||| | |||| || ||| |||||||| ||||||| Sbjct 5071 GGTAAGGGTAGGGCTGCCGCCACCGGAACGGCGTCAATTCCAGCCA 5026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 22496601951668