Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_021862.1 Length=8576 Score E Sequences producing significant alignments: (Bits) Value seq11607 98.7 5e-17 >seq11607 Length=1238 Score = 98.7 bits (108), Expect = 5e-17 Identities = 237/350 (68%), Gaps = 8/350 (2%) Strand=Plus/Plus Query 6541 CATCAGTCGCCCGCGCATCATCCACAGATTGCTCAGGGCAAACAGCGTGTGTAATTGCTG 6600 || ||| |||| ||||| ||||| | ||||||||| || | | ||| | ||||||| Sbjct 642 CACCAGCCGCCGGCGCACCATCCGGAAATTGCTCAGCGCGGATAACGTTTTGAATTGCTC 701 Query 6601 TGTGTTCTTTATCAAGCCTCGATAGCGCACCCTCAAGTGCCCAAACTGGCGCTTGATGAC 6660 |||| || || || || || |||||| ||| ||||| ||||||||||||| || Sbjct 702 GGTGTCTTTCTTCGGCCCCCGGTAACGCACCTTCACTTGCCCCAACTGGCGCTTGACTAC 761 Query 6661 TCGGAACGGATGTTCCACGCGGGCACGAATGCGCGCCTTGACCCGCTCCAGCTCATCGAC 6720 || || || |||||| | ||| ||||||| ||| |||| |||| || || || Sbjct 762 GCGAAAAGGGTGTTCC-CCTTGGCCCGAATGCTCGCATTGA-GTTTTCCAACTGATGCAC 819 Query 6721 GAGCGCACCCGACACGGTGCTC-TTGTCCAAGGCGCGGCGTTTGCCCGGGCGTAATGCCA 6779 | ||| | | | || ||||| ||||| | | |||||| | ||| | || | Sbjct 820 CATCGC-CTCTATGCGCTGCTCTTTGTCAAGTTCCCGGCGTATCGACGGCTCCATGGCTA 878 Query 6780 CATGCCAACGCACCTTCAACTCCTGCACCTCTTCGCGCTTGTCGATGCCCTGATAGCCGG 6839 | ||||| | || ||| || | | | || | ||||||| || || || ||| | | Sbjct 879 CTTGCCATTGGAC--GCAA-TCTTTCGCATCGGCTCGCTTGTGCATACCTTGGTAGTCTG 935 Query 6840 CATCGCCGAACACGTCGGCCTCCTTGCCATGCACCAATGC-GTTGCGCTG 6888 ||||||| | |||| || |||| ||| |||| || || |||| |||| Sbjct 936 CATCGCCAACGGCGTCTGCTTCCTGGCCGTGCATCACGGCTGTTGGGCTG 985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 27317073889840