Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F000764265.1_202014-10-06] 8,992 sequences; 45,609,708 total letters Query= NC_022089.1 Length=3780 Score E Sequences producing significant alignments: (Bits) Value seq4776 165 2e-37 seq31 147 5e-32 seq2693 131 4e-27 seq7707 114 3e-22 seq6479 87.8 4e-14 seq1300 77.0 8e-11 >seq4776 Length=3322 Score = 165 bits (182), Expect = 2e-37 Identities = 325/467 (70%), Gaps = 28/467 (6%) Strand=Plus/Plus Query 896 TACGTTCTCGTCTCCGGTGTCGAAGTTGGCTCGC-GTCCTTTCCAGGATGACTACCTCAT 954 |||||||| ||| ||||| ||||| ||| | |||| ||| || ||||||| || Sbjct 374 TACGTTCTTGTCGGAGGTGTTGAAGTCGGCACCAAGTCCAA-CCAAGACGACTACCAAAT 432 Query 955 CCGACATGTTCACCTCGCCCTTGTCTACAATAACCGAGTCACCAAGTCAAGCATTCTCAA 1014 | ||| || ||| |||| || |||||||| ||||| ||||||||||||||||| ||||| Sbjct 433 CGAACACGTGCACGTCGCGCTCGTCTACAACAACCGCGTCACCAAGTCAAGCATCCTCAA 492 Query 1015 AAACCTGGGGGTCAAGCAAGGAAATGGGTATTACCTGGTCCCACGCAAACGCGAGT-TTC 1073 |||||| || |||||||||| ||||| || || || || ||| | ||| ||| | | Sbjct 493 AAACCTCGGCATCAAGCAAGGGAATGGTTACTATCTTGTTCCATG-GAACAGAAGTCTCC 551 Query 1074 CTTACAGCGGTTGGAAAAAACATCATACCAAGACCGAAACCAAAGTGGATGCCG--CTTC 1131 |||||||||| ||| ||||||| |||| | | |||||| ||| ||| | Sbjct 552 CTTACAGCGGATGGCGTGCTCATCATATCAAGCAACACAGCAAAGTCGAT-CCGTCCAAA 610 Query 1132 TCTTTGCCTCTACGAGTACGGAATTCTACCAACCGA--CCGTTTGGCAGCAGTGGAATCC 1189 | | ||||||||| | || || ||| || || || |||| | | Sbjct 611 ACCAT-CCTCTACGAACAAGGCTCGCTCCCAGAAGATGACGCTTCACAGCGCT------C 663 Query 1190 GCGCCCCGTTCAGCCGAAGAAAAGAAACGCAAGCTTGATGACATCATCGTCGAAATGCGC 1249 || | || || |||||||||||||||||| | ||||| || ||||||||||||| Sbjct 664 TCGTCTCG--GAGAAGAAGAAAAGAAACGCAAGATCGATGAAGTCCTCGTCGAAATGCGT 721 Query 1250 CAACTCATCGAGGAAGGCCGTGAAGAGGAGTCTT----TTAGAAAG-TTTCCACGAAACC 1304 |||||||| |||| || |||| || ||| || || | ||||| || ||| Sbjct 722 ACGCTCATCGAAGAAG---GTAAAGACGA--CTTAGCCTTCGAGCGTTTTCCGCGCAACT 776 Query 1305 ACCTAACGTATGGAGAAAAAATCAAGGCTATGGTCATGCAAAAGCGT 1351 ||||| |||||| || || ||||||| ||| |||||||||| Sbjct 777 ACCTACAGTATGGCGAGAAGCTCAAGGCCATGTGTGCGCAAAAGCGT 823 >seq31 Length=4568 Score = 147 bits (162), Expect = 5e-32 Identities = 306/447 (68%), Gaps = 18/447 (4%) Strand=Plus/Plus Query 896 TACGTTCTCGTCTCCGGTGTCGAAGTTGGCTCGC-GTCCTTTCCAGGATGACTACCTCAT 954 |||||||| ||| ||||||||||| || | |||| ||| |||||||||| || Sbjct 1552 TACGTTCTTGTCGGAGGTGTCGAAGTCGGAACAAAGTCCAA-CCAAGATGACTACCAAAT 1610 Query 955 CCGACATGTTCACCTCGCCCTTGTCTACAATAACCGAGTCACCAAGTCAAGCATTCTCAA 1014 | |||||| ||| |||| || ||||| ||||| || |||||||| ||||||||||| Sbjct 1611 CGAACATGTCCACGTCGCGCTCATCTACGTCAACCGCGTTACCAAGTCGAGCATTCTCAA 1670 Query 1015 AAACCTGGGGGTCAAGCAAGGAAATGGGTATTACCTGGTCCCACGCAAACGCGAGTTTCC 1074 |||||| | |||||||||| || || || || || || ||||| || || | | || Sbjct 1671 AAACCTCGCCATCAAGCAAGGGAACGGTTACTATCTCGTTCCACGAAACCGAAATCTGCC 1730 Query 1075 TTACAGCGGTTGGAAAAAACATCATACCAAGACCGAAACCAAAGTGGATGCCGCTTCTCT 1134 ||||||||| ||| || |||| |||| | ||||||| ||| | | | Sbjct 1731 TTACAGCGGATGGCGTTCTCACCATATCAAGGAACACTCCAAAGTCGATCCGTCCAAGCG 1790 Query 1135 TTGCCTCTACGAGTACGGAATTCTACCAACCGAC--CGTTTGGCAGCAGTGGAATCCGCG 1192 ||||| ||| | || || ||| ||| || || |||| ||| | || Sbjct 1791 CATCCTCTTCGAAGAAGGTTCGCTCCCAGAAGACGACGCTTCACAGC----GAA--CTCG 1844 Query 1193 CCCCGTTCAGCCGAAGAAAAGAAACGCAAGCTTGATGACATCATCGTCGAAATGCGCCAA 1252 || || ||||||||||| |||||| ||||| || ||||||||||||| Sbjct 1845 TATCG--GAGAAGAAGAAAAGAAGCGCAAGACCGATGAGGTCCTCGTCGAAATGCGTACG 1902 Query 1253 CTCATCGAGGAAGGCCGTGAAGAGGAGT--CTTTTAGAAAGTTT-CCACGAAACCACCTA 1309 |||||||| |||||| |||| |||| || ||| |||| || || || |||| Sbjct 1903 CTCATCGAAGAAGGC---AAAGACGAGTTAGCGTTCGAACGTTTCCCTCGCAATTACCTG 1959 Query 1310 ACGTATGGAGAAAAAATCAAGGCTATG 1336 ||||||||| || ||||||||| || Sbjct 1960 CAGTATGGAGAGAAGATCAAGGCTTTG 1986 Score = 125 bits (138), Expect = 2e-25 Identities = 145/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 896 TACGTTCTCGTCTCCGGTGTCGAAGTTGGCTCGC-GTCCTTTCCAGGATGACTACCTCAT 954 |||||||| ||| ||||||||||| || | |||| ||| |||||||||| || Sbjct 345 TACGTTCTTGTCGGAGGTGTCGAAGTCGGAACAAAGTCCAA-CCAAGATGACTACCAAAT 287 Query 955 CCGACATGTTCACCTCGCCCTTGTCTACAATAACCGAGTCACCAAGTCAAGCATTCTCAA 1014 | |||||| ||| |||| || ||||| ||||| || |||||||| ||||||||||| Sbjct 286 CGAACATGTCCACGTCGCGCTCATCTACGTCAACCGCGTTACCAAGTCGAGCATTCTCAA 227 Query 1015 AAACCTGGGGGTCAAGCAAGGAAATGGGTATTACCTGGTCCCACGCAAACGCGAGTTTCC 1074 |||||| | |||||||||| || || || || || || ||||| || || | | || Sbjct 226 AAACCTCGCCATCAAGCAAGGGAACGGTTACTATCTCGTTCCACGAAACCGAAATCTGCC 167 Query 1075 TTACAGCGGTTGG 1087 ||||||||| ||| Sbjct 166 TTACAGCGGATGG 154 >seq2693 Length=4522 Score = 131 bits (144), Expect = 4e-27 Identities = 305/449 (68%), Gaps = 22/449 (5%) Strand=Plus/Plus Query 896 TACGTTCTCGTCTCCGGTGTCGAAGTTGGCTCGCGTCCTTTCCAGGATGACTACCTCATC 955 |||||||| ||| ||||||||| | || | | ||| || || |||| ||| Sbjct 2993 TACGTTCTTGTCGGAGGTGTCGAAATCGGAACCAAGTCAAACCAAGACGATTACCAAATC 3052 Query 956 CGACATGTTCACCTCGCCCTTGTCTACAATAACCGAGTCACCAAGTCAAGCATTCTCAAA 1015 ||| || ||| |||| || ||||||| ||||| ||||||||||| ||||| ||| || Sbjct 3053 GAACACGTCCACGTCGCGCTCGTCTACATCAACCGCGTCACCAAGTCGAGCATCCTCTAA 3112 Query 1016 AACCTGGGGGTCAAGCAAGGAAATGGGTATTACCTGGTCCCACGCAAACGCGAGTTTCCT 1075 ||||| ||||||||||| || || || || || || ||||| || ||| | | ||| Sbjct 3113 AACCTCAACGTCAAGCAAGGGAACGGTTACTATCTCGTTCCACGAAACCGCAATCTGCCT 3172 Query 1076 TACAGCGGTTGGAAAAAACATCATACCAAGACCGAAACCAAAGTGGATGCCGCTTCTCTT 1135 |||||||| ||| || |||| |||| | ||||||| ||| ||| || Sbjct 3173 TACAGCGGATGGCGTTCTCACCATATCAAGGAATACTCCAAAGTCGAT-CCG--TCCAAG 3229 Query 1136 TG---CCTCTACGAGTACGGAATTCTACCAACCGAC--CGTTTGGCAGCAGTGGAATCCG 1190 || |||||| || | || || ||| ||| || || || ||| | | | Sbjct 3230 TGCATCCTCTATGAACAAGGTTCGCTCCCAGAAGACGACGCTT--CA-CAGCGCA---CT 3283 Query 1191 CGCCCCGTTCAGCCGAAGAAAAGAAACGCAAGCTTGATGACATCATCGTCGAAATGCGCC 1250 || | || || |||||||| || |||||| | || || || ||||||||||||| Sbjct 3284 CGTCTCG--GAGAAGAAGAAAAAAAGCGCAAGATCGACGAAGTCCTCGTCGAAATGCGGA 3341 Query 1251 AACTCATCGAGGAAGGCCGTGAAGAGGAGT--CTTTTAGAAAG-TTTCCACGAAACCACC 1307 |||||||| |||| || |||| |||| ||| ||| | ||||| || ||| ||| Sbjct 3342 CGCTCATCGAAGAAG---GTAAAGATGAGTTAGCTTTCGAACGTTTTCCTCGCAACTACC 3398 Query 1308 TAACGTATGGAGAAAAAATCAAGGCTATG 1336 | ||| || || || |||||||| ||| Sbjct 3399 TCCAGTACGGTGAGAAGATCAAGGCCATG 3427 Score = 86.0 bits (94), Expect = 2e-13 Identities = 262/400 (66%), Gaps = 14/400 (4%) Strand=Plus/Minus Query 937 CCAGGATGACTACCTCATCCGACATGTTCACCTCGCCCTTGTCTACAATAACCGAGTCAC 996 ||| || ||||||| ||||| || || ||| | | | ||||| | ||||| || | Sbjct 2166 CCAAGACGACTACCAAATCCGTCACGTGCACGCCTGCATCATCTACCACAACCGTGTGTC 2107 Query 997 CAAGTCAAGCATTCTCAAAAACCTGGGGGTCAAGCAAGGAAATGGGTATTACCTGGTCCC 1056 |||||| ||| ||||| ||| | | | || ||||||||||| || || ||||| || Sbjct 2106 CAAGTCGTCCATCCTCAAGAACTGGAAGATTAAACAAGGAAATGGCTACTATCTGGTTCC 2047 Query 1057 ACGCAAACGCGAGTTTCCTTACAGCGGTTGGAAAAAACATCATACCAAGACCGAAACCAA 1116 ||| || || || || |||||| ||| ||| | || |||| |||| |||| Sbjct 2046 ACGGAACCGAGATTTGCCTTACTCCGGATGGCGAGCTCACCATATCAAGGAGTTCTCCAA 1987 Query 1117 AGTGG---ATGCCGCTTCTCTTTGCCTCTACGAGTACGGAATTCTACCAACCGACCGTTT 1173 || | | | | | | | ||||||||| | |||| ||| || | ||| Sbjct 1986 GGTCGACAAGGAAGAATGTAT---CCTCTACGAAGAGGGAACTCTTCCCGCAGAC--GAA 1932 Query 1174 GGCAGCAGTGGAATCCGCGCCCCGTTCAGCCGAAGAAAAGAAACGCAAGCTTGATGACAT 1233 ||| || | |||||||| || | ||||||| | ||||| |||| || || Sbjct 1931 GGCTCCACCGACGTCCGCGCC----TCTACGAAAGAAAAACAGCGCAAAATTGACGAAAT 1876 Query 1234 CATCGTCGAAATGCGCCAACTCATCGAGGAAGGCCGTGAAGAGGAGTCTTTTAGAAAGTT 1293 | ||||||||||||| ||||| || | || | ||||| | || ||| ||| Sbjct 1875 CCTCGTCGAAATGCGAACGCTCATTGAAGCAGACAAGGAAGACCTCGC-CTTCGAACGTT 1817 Query 1294 T-CCACGAAACCACCTAACGTATGGAGAAAAAATCAAGGC 1332 | ||| ||||| | || | ||| |||||||| | ||||| Sbjct 1816 TCCCAAGAAACTATCTCATGTACGGAGAAAAGCTAAAGGC 1777 >seq7707 Length=4906 Score = 114 bits (126), Expect = 3e-22 Identities = 222/321 (69%), Gaps = 5/321 (2%) Strand=Plus/Minus Query 788 CACCACG-TCGACCGCGAGTGGGATGCCCGCTTCAACGTACCAACTCAAGAAGACCTCGA 846 ||||||| | || || ||||||| ||||| |||||||| | ||| | || |||||| Sbjct 2850 CACCACGATGGATCGTCAGTGGGACGCCCGTTTCAACGTGCAAACCGACGACGACCTCAG 2791 Query 847 TGTTATCGTCGCTTCCG-TCAAGGCCGAAGTCCAAGCTGGTCGG-TTCAAGTACGTTCTC 904 || ||||| | | || || |||| | | || || ||| | ||| |||| Sbjct 2790 CAACCTCCTCGCTGCTGCTCGAG-CCGAGTGGGATTCCGGACGACTTCGA-TACCTTCTT 2733 Query 905 GTCTCCGGTGTCGAAGTTGGCTCGCGTCCTTTCCAGGATGACTACCTCATCCGACATGTT 964 || ||||||||| | || | || || ||| || ||||| | | ||||| || Sbjct 2732 ATCGGAGGTGTCGAAATCGGAACCCGACCAAACCAAGACGACTATCAAGTGCGACACGTC 2673 Query 965 CACCTCGCCCTTGTCTACAATAACCGAGTCACCAAGTCAAGCATTCTCAAAAACCTGGGG 1024 || ||| | || ||||| |||||||| | |||||| ||||| ||||| ||| | Sbjct 2672 CATTGCGCAATCGTGTACAACAACCGAGTTAGCAAGTCCAGCATCCTCAAGAACTGGAAA 2613 Query 1025 GTCAAGCAAGGAAATGGGTATTACCTGGTCCCACGCAAACGCGAGTTTCCTTACAGCGGT 1084 ||||||||||||| || || || || || ||||| || || || || ||||||||||| Sbjct 2612 ATCAAGCAAGGAAACGGCTACTATCTTGTTCCACGGAACCGAGATTTCCCTTACAGCGGA 2553 Query 1085 TGGAAAAAACATCATACCAAG 1105 |||| | ||||||| |||| Sbjct 2552 TGGAGGGATCATCATATCAAG 2532 >seq6479 Length=6311 Score = 87.8 bits (96), Expect = 4e-14 Identities = 110/151 (73%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 937 CCAGGATGACTACCTCATCCGACATGTTCACCTCGCCCTTGTCTACAATAACCGAGTCAC 996 ||| || ||||||| ||||| || || ||| | | | ||||| | ||||| || | Sbjct 1154 CCAAGACGACTACCAGATCCGTCACGTGCACGCCTGCATCATCTACCACAACCGTGTGTC 1213 Query 997 CAAGTCAAGCATTCTCAAAAACCTGGGGGTCAAGCAAGGAAATGGGTATTACCTGGTCCC 1056 |||||| ||| ||||||||| | | ||||||||||||| || || || ||||| || Sbjct 1214 CAAGTCGTCCATCCTCAAAAACTGGAAGATCAAGCAAGGAAACGGCTACTATCTGGTTCC 1273 Query 1057 ACGCAAACGCGAGTTTCCTTACAGCGGTTGG 1087 ||| || || || || |||||| ||| ||| Sbjct 1274 ACGGAACCGAGATTTGCCTTACTCCGGATGG 1304 >seq1300 Length=3986 Score = 77.0 bits (84), Expect = 8e-11 Identities = 101/136 (74%), Gaps = 8/136 (6%) Strand=Plus/Minus Query 1205 GAAGAAAAGAAACGCAAGCTTGATGACATCATCGTCGAAATGCGCCAACTCATCGAGGAA 1264 |||||||||||||||||| | || || || ||||||||||||| |||||||| ||| Sbjct 3003 GAAGAAAAGAAACGCAAGATCGACGAAGTCCTCGTCGAAATGCGGACGCTCATCGAAGAA 2944 Query 1265 GGCCGTGAAGAGGAGTCT---TTTAGAAAG-TTTCCACGAAACCACCTAACGTATGGAGA 1320 | || |||| || || ||| || | |||||||| ||| | || ||| ||||| Sbjct 2943 G---GTAAAGATGA-CCTAGCTTTCGAGCGTTTTCCACGCAACTATCTCCAGTACGGAGA 2888 Query 1321 AAAAATCAAGGCTATG 1336 || |||||||| ||| Sbjct 2887 GAAGATCAAGGCCATG 2872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 11982821373600