Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001029375.1_202015-05-08] 1,192 sequences; 53,239,050 total letters Query= NC_022089.1 Length=3780 Score E Sequences producing significant alignments: (Bits) Value seq472 181 3e-42 seq98 125 2e-25 seq211 104 6e-19 >seq472 Length=20018 Score = 181 bits (200), Expect = 3e-42 Identities = 530/813 (65%), Gaps = 18/813 (2%) Strand=Plus/Plus Query 776 TTCGTTCCTTTCCACCACGTCGACCGCGAGTGGGATGCCCGCTTCAACGTACCAACTCAA 835 || || || | ||||||||||||||| |||||||| || ||||| ||||| || || | Sbjct 616 TTTGTGCCGTACCACCACGTCGACCGTGAGTGGGACGCACGCTTTAACGTGCCGACCGAG 675 Query 836 GAAGACCTCGATGTTATCGTCGCTTCCGTCAAGGCCGAAGTCCAAGCTGGTCGGTTCAAG 895 |||||| | || | | | | || |||| || || || || |||| Sbjct 676 GAAGACTTGGAACTCCTTCTACTGTGTGTGAAGGAAGAGTATGAACGAGGCAAGTACAAG 735 Query 896 TACGTTCTCGTCTCCGGTGTCGAAGTTGGCTCGCGTCCTTTCCAGGATGACTACCTCATC 955 ||||| |||||||| || ||||||| || | | ||||| | || |||||||| || Sbjct 736 TACGTACTCGTCTCGGGCATCGAAGTCGGGACACAGCCTTTTCGAGACGACTACCTGATG 795 Query 956 CGACATGTTCACCTCGCCCTTGTCTACAATAACCGAGTCACCAAGTCAAGCATTCTCAAA 1015 || || || ||| | | | ||||| ||||| || | |||| |||||| || Sbjct 796 CGCCACGTACACTGCTGTTTCGGGTACAACAACCGCGTGAGCAAGAGCGCCATTCTGAAG 855 Query 1016 AACCTGGGGGTCAAGCAAGGAAATGGGTATTACCTGGTCCCACGCAAACGCGAGTTTCCT 1075 ||||| | ||||||| || || || ||||| ||||| || ||||| || || || Sbjct 856 AACCTCAAGATCAAGCAGGGTAACGGATATTATCTGGTGCCCCGCAATCGAAGCTTGCCC 915 Query 1076 TACAGCGGTTGGAAAAAACATCATACCAAGACCGAAACCAAAGTGGATGCC---GCTTCT 1132 |||| || ||| | ||||| | ||| || || ||||| || ||| | | Sbjct 916 TACAAAGGATGGCGTGACCATCACGCAAAGGAAGACACGAAAGTCGACGCCAACGAGACG 975 Query 1133 CTTTGCCTCTACGAGTACGGAATTCTACCAACCGACCG---TTTGGCAGCAGTGGAATCC 1189 || ||||| ||| | || | || || ||| | | || | || || | Sbjct 976 ATT---CTCTATGAGAATGGCGTGCTCCCGCAGGACAAGGCTGTAGCCGAAGCTCAAGTC 1032 Query 1190 GCGCCCCGTTCAGCCGAAGAAAAGAAACGCAAGCTTGATGACATCATCGTCGAAATGCGC 1249 | || || || ||||||||||| || || ||||||||||||||| | || ||| | Sbjct 1033 ACCTTGCGGTCGGCGGAAGAAAAGAAGCGAAAACTTGATGACATCATCATGGAGATGAGA 1092 Query 1250 CAACTCATCGAGGAAGGCCGTGAAGAGGAGTCTTTTAGAAAGTTTCCACGAAACCACCTA 1309 | || || |||||| || || ||| | || | || || ||| | || | || Sbjct 1093 GGTATGATTGAAGAAGGCAAAGATGAAGAGGCGTTCAAGAAATTCCCAAGGAATTANCTG 1152 Query 1310 ACGTATGGAGAAAAAATCAAGGCTATGGTCATGCAAAAGCGTGACTTCTTCAAGAGCAAA 1369 |||||||| ||||| |||||| || ||||| | || ||| | |||||| || Sbjct 1153 ACGTATGGTGAAAAGATCAAGTCTCTGGTCGTCCA-------GACCTGTTCAAGGCTAAC 1205 Query 1370 GGAGATCCTCACATTTGGTTGTTTGGAAACCCTGGATCCGGCAAGTCAGCCATTCTTCAA 1429 ||||| || || | ||||||| || || || | | || || || || | Sbjct 1206 GGAGACCCCCATGTGTGGTTGTGGGGTCTTCCAGGTACGGATAAATCGGCTCTTATGGGC 1265 Query 1430 GTAATCTACCCAGAATACTACAACAAGAACGTGGAGAACCGATTCTTCGATCGTTATCTT 1489 || |||||||| || ||||||||||||||| | || | ||| || ||||| | || Sbjct 1266 GTGATCTACCCCGACTACTACAACAAGAACCTAGACACCCGTTTTTTCGACTGCTACAAC 1325 Query 1490 GACGGTCAACACTCCCACGTGCTT-CTACAAGATGTCGACCATAATGTCATGGATAATTT 1548 || | || || | || ||||| | ||||||||||| || || || | || || || Sbjct 1326 GAAGAACATCATACGCA-TTGCTTGATGCAAGATGTCGATCACAACGTTGTCGAAAAATT 1384 Query 1549 GGGCGTTCAATTCTTTAAGAGTGTGTGTGACGA 1581 ||| || || ||||| ||| ||| || ||||| Sbjct 1385 GGGTGTCCAGTTCTTCAAGTCTGTTTGCGACGA 1417 >seq98 Length=155855 Score = 125 bits (138), Expect = 2e-25 Identities = 288/423 (68%), Gaps = 22/423 (5%) Strand=Plus/Plus Query 937 CCAGGATGACTACCTCATCCGACATGTTCACCTCGCCCTTGTCTACAATAACCGAGTCAC 996 ||| || ||||| | ||| ||| || ||| ||| || |||||||| ||||| ||||| Sbjct 5469 CCAAGACGACTATCAGATCGAACACGTCCACTGCGCGCTCGTCTACAACAACCGGGTCAC 5528 Query 997 CAAGTCAAGCATTCTCAAAAACCTGGGGGTCAAGCAAGGAAATGGGTATTACCTGGTCCC 1056 |||||| ||| ||||| ||||| || |||||||||| ||||| || || || || || Sbjct 5529 CAAGTCGTCCATCCTCAAGAACCTCGGAATCAAGCAAGGTAATGGCTACTATCTTGTTCC 5588 Query 1057 ACGCAAACGCGAGTTT-CCTTACAGCGGTTGGAAAAAACATCATACCAAGACCGAAACCA 1115 ||| ||| ||||| ||||||||||| ||| || |||| ||||| | | | | Sbjct 5589 ACG-GAACAGAAGTTTGCCTTACAGCGGATGGCGTGCTCACCATATCAAGAGCCACTCAA 5647 Query 1116 AAGTGGATGCCGCTTCTCTTTGCCTCTACGAGTACGGAATTCTACCAACCGA--CCGTTT 1173 |||| ||| | | ||||||||| | || || ||| || || || Sbjct 5648 AAGTCGATCCGACCAAGAACATCCTCTACGAACAAGGCTCGCTCCCAGAAGATGACGCTT 5707 Query 1174 GGCAGCAGTGGAATCCGCGCCCCGTTCAGCCGAAGAAAAGAAACGCAAGCTTGATGACAT 1233 |||| | | || | || || |||||||| || |||||| | ||||| | Sbjct 5708 CACAGCGCT------CTCGTCTCG--GAGAAGAAGAAAAAAAGCGCAAGATCGATGAAGT 5759 Query 1234 CATCGTCGAAATGCGCCAACTCATCGAGGAAGGCCGTGAAGAGGAGTCT---TTTAGAAA 1290 | ||||||||||||| || |||||||| |||| || |||| || || || || Sbjct 5760 CCTCGTCGAAATGCGTCAGCTCATCGAAGAAG---GTCAAGACGA-ACTAGCGTTCGAGC 5815 Query 1291 G-TTTCCACGAAACCACCTAACGTATGGAGAAAAAATCAAGGCTATG-GTCATGCAAAAG 1348 | ||||| || ||| | | ||||||||| || |||||||| ||| || | |||||| Sbjct 5816 GTTTTCCTCGCAACTATATCCAGTATGGAGAGAAGATCAAGGCCATGTGTGCT-CAAAAG 5874 Query 1349 CGT 1351 ||| Sbjct 5875 CGT 5877 >seq211 Length=85693 Score = 104 bits (114), Expect = 6e-19 Identities = 249/366 (68%), Gaps = 17/366 (5%) Strand=Plus/Minus Query 977 GTCTACAATAACCGAGTCACCAAGTCAAGCATTCTCAAAAACCTGGGGGTCAAGCAAGG- 1035 || ||||| ||||||||||||||||| || ||||| ||| | || |||||||||| Sbjct 56299 GTGTACAACAACCGAGTCACCAAGTCGTCGATCCTCAAGAACNTCGGCATCAAGCAAGGG 56240 Query 1036 AAATGGGTATTACCTGGTCCCACGCAAACGCGAGTTTCC-TTACAGCGGTTGGAAAAAAC 1094 ||| || || || || || ||| | || || ||| ||| ||||||||| ||| | Sbjct 56239 AAACGGTTACTATCTCGTTCCAAGGAACCGA-AGTCTCCCTTACAGCGGATGGCGTGCTC 56181 Query 1095 ATCATACCAAGACCGAAACCAAAGTGGATGCC-GCTTCTCTTTGCCTCTACGAGTACGGA 1153 | |||| |||| | | | |||||| |||||| || | | ||| ||||| | || Sbjct 56180 ACCATATCAAGTCGCACAGCAAAGTCGATGCCAGCAAGGCCAT-CCTGTACGAACAAGGC 56122 Query 1154 ATTCTACCAACCGAC--CGTTTGGCAGCAGTGGAATCCGCGCCCCGTTCAGCCGAAGAAA 1211 ||| || || || || |||| | | || | || || ||||||| Sbjct 56121 TCTCTCCCGGAAGATGACGCTTCACAGCGCT------CTCGTCTCGG--AGAAGAAGAAA 56070 Query 1212 AGAAACGCAAGCTTGATGACATCATCGTCGAAATGCGCCAACTCATCGAGGAAGGCCGTG 1271 | || ||||| | || || || |||| |||||||||||||||||||| ||||| | | Sbjct 56069 AAAAGCGCAAAATCGACGAAGTCCTCGTTGAAATGCGCCAACTCATCGAAGAAGGTCAAG 56010 Query 1272 AAGAGGAGTCTTTTAGAAAG-TTTCCACGAAACCACCTAACGTATGGAGAAAAAATCAAG 1330 | ||| | ||| ||| | ||||| || ||| | || ||| ||||| || |||||| Sbjct 56009 ATGAGCTAGCGTTT-GAACGCTTTCCTCGGAACTATCTCCAGTACGGAGAGAAGATCAAG 55951 Query 1331 GCTATG 1336 || ||| Sbjct 55950 GCCATG 55945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 11983843758600