Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950795.1_202016-12-27] 17,277 sequences; 65,230,783 total letters Query= NC_022089.1 Length=3780 Score E Sequences producing significant alignments: (Bits) Value seq7516 107 5e-20 seq5406 102 2e-18 seq3677 93.3 1e-15 >seq7516 Length=1085 Score = 107 bits (118), Expect = 5e-20 Identities = 196/287 (68%), Gaps = 0/287 (0%) Strand=Plus/Plus Query 776 TTCGTTCCTTTCCACCACGTCGACCGCGAGTGGGATGCCCGCTTCAACGTACCAACTCAA 835 || ||||| | |||||||| || || |||||||| || || || ||||| || || Sbjct 634 TTTGTTCCGTATCACCACGTGGATCGTGAGTGGGACGCACGTTTTAACGTGCCGACCGCT 693 Query 836 GAAGACCTCGATGTTATCGTCGCTTCCGTCAAGGCCGAAGTCCAAGCTGGTCGGTTCAAG 895 ||||||||||| | || | | || || | ||| | | ||| || |||| Sbjct 694 GAAGACCTCGAGATGCTCCTTCTGTGTGTAAAAGAGGAATACGAGTGTGGCAAGTACAAG 753 Query 896 TACGTTCTCGTCTCCGGTGTCGAAGTTGGCTCGCGTCCTTTCCAGGATGACTACCTCATC 955 || ||||| || |||| ||||||| || ||| || || | |||||||||||||| Sbjct 754 TATGTTCTTGTGAGCGGTATCGAAGTGGGAACGCAGCCGTTTCGCGATGACTACCTCATG 813 Query 956 CGACATGTTCACCTCGCCCTTGTCTACAATAACCGAGTCACCAAGTCAAGCATTCTCAAA 1015 || |||| || | |||| ||||| || || || | |||||| ||| | || Sbjct 814 TGATATGTGCATTGCTGTTTTGTGTACAACAATCGCGTAAGCAAGTCCGCCATCCCAAAG 873 Query 1016 AACCTGGGGGTCAAGCAAGGAAATGGGTATTACCTGGTCCCACGCAA 1062 |||||| | |||||||||| || || || || || || |||||||| Sbjct 874 AACCTGAAGATCAAGCAAGGCAACGGATACTATCTCGTGCCACGCAA 920 >seq5406 Length=2006 Score = 102 bits (112), Expect = 2e-18 Identities = 306/461 (66%), Gaps = 16/461 (3%) Strand=Plus/Minus Query 896 TACGTTCTCGTCTCCGGTGTCGAAGTTGGCTCGCGTCCTTTCCAGGATGACTACCTCATC 955 |||||||| ||| ||||| ||| | ||| | ||| ||||| ||||||| ||| Sbjct 1857 TACGTTCTTGTCGGAGGTGTTGAAATCGGCACCAAGTCTTCGCAGGACGACTACCAAATC 1798 Query 956 CGACATGTTCACCTCGCCCTTGTCTACAATAACCGAGTCACCAAGTCAAGCATTCTCAAA 1015 ||||| || || ||| | ||||||| ||||||||||||||||| || ||||| Sbjct 1797 CGACACGTGCATTGTGCCTTCATCTACAACAACCGAGTCACCAAGTCCTCGATCCTCAAG 1738 Query 1016 AACCTGGGGGTCAAGCAAGGAAATGGGTATTACCTGGTCCCACGCAAACGCGAGTTTCCT 1075 ||||| ||| || ||||| || || || || || || ||||| || || || | || Sbjct 1737 AACCTCGGGATCGTCCAAGGGAACGGTTACTATCTTGTTCCACGAAACCGAGATCTCTCT 1678 Query 1076 TACAGCGGTTGGAAAAAACATCATAC-CAAGACCGAAACCAAAGTGGATGCCGC-TTCTC 1133 ||| || ||| || ||||| |||| | | | ||| || || |||| | | Sbjct 1677 TACTCAGGATGGCGCGCTCACCATACAAAAGAGC-ACAGCAAGGTCGA-CCCGCGTACGA 1620 Query 1134 TTTGCCTCTACGAGTACGG--AATTCTACCAACCGACCGTTTGGCAGCAGTGGAATCCGC 1191 | |||| ||| | || || || || | | || |||| ||| ||| Sbjct 1619 CCGTCATCTATGAGAAAGGTCAACTCCCTGAAGAAAACCCTTCACAGC----GAA--CGC 1566 Query 1192 GCCCCGTTCAGCCGAAGAAAAGAAACGCAAGCTTGATGACATCATCGTCGAAATGCGCCA 1251 | | || | | ||||||||||| |||||| | ||||| || || |||||||| || Sbjct 1565 GTCTCGGT--GAAGAAGAAAAGAAGCGCAAGATCGATGAAGTCCTCATCGAAATGAGCGG 1508 Query 1252 ACTCATCGAGGAAGGCCGTGAAGAGGAGTCTTTTAGAAAG-TTTCCACGAAACCACCTAA 1310 || ||||| | || | |||| | | || ||| | ||||| || | | ||||| Sbjct 1507 CCTAATCGAAAACGGTCAAGAAG-CTATTGCGTTTGAACGCTTTCCGCGTACCTACCTAC 1449 Query 1311 CGTATGGAGAAAAAATCAAGGCTATGGTCATGCAAAAGCGT 1351 ||||| || ||||||||||||||| | | ||||||||| Sbjct 1448 AATATGGCGAGAAAATCAAGGCTATGACCGTCCAAAAGCGT 1408 >seq3677 Length=3870 Score = 93.3 bits (102), Expect = 1e-15 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 938 CAGGATGACTACCTCATCCGACATGTTCACCTCGCCCTTGTCTACAATAACCGAGTCACC 997 ||||| ||||||| ||||| || || ||| ||||| |||||||| || ||||||||| Sbjct 3237 CAGGACGACTACCAAATCCGGCACGTGCACTGTGCCCTCGTCTACAACAATCGAGTCACC 3178 Query 998 AAGTCAAGCATTCTCAAAAACCTGGGGGTCAAGCAAGGAAATGGGTATTACCTGGTCCCA 1057 ||||| || ||||||||||| || || ||||| || || || || || || ||| Sbjct 3177 AAGTCGTCAATCCTCAAAAACCTCGGCATCGTCCAAGGGAACGGTTACTATCTTGTTCCA 3118 Query 1058 CGCAAACGCGAGTTTCCTTAC 1078 || || || || || ||||| Sbjct 3117 CGAAACCGAGATTTGTCTTAC 3097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 11981735417225