Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950815.1_202016-12-27] 15,153 sequences; 47,142,494 total letters Query= NC_022089.1 Length=3780 Score E Sequences producing significant alignments: (Bits) Value seq2323 181 3e-42 seq5597 100 7e-18 seq6625 89.7 1e-14 >seq2323 Length=4173 Score = 181 bits (200), Expect = 3e-42 Identities = 449/680 (66%), Gaps = 1/680 (0%) Strand=Plus/Minus Query 1196 CGTTCAGCCGAAGAAAAGAAACGCAAGCTTGATGACATCATCGTCGAAATGCGCCAACTC 1255 || || |||||||| ||||| || || || |||||||||||| | || ||||| | | Sbjct 2363 CGGTCCGCCGAAGAGAAGAAGCGAAAACTAGATGACATCATCATGGAGATGCGTGGAATG 2304 Query 1256 ATCGAGGAAGGCCGTGAAGAGGAGTCTTTTAGAAAGTTTCCACGAAACCACCTAACGTAT 1315 || || ||||| || || || | || | |||||||| || || |||| |||||| Sbjct 2303 ATTGAAGAAGGTAAAGACGACGAAGCCTTCAAGAAGTTTCCTCGCAATTACCTGACGTAT 2244 Query 1316 GGAGAAAAAATCAAGGCTATGGTCATGCAAAAGCGTGACTTCTTCAAGAGCAAAGGAGAT 1375 || ||||| |||||| | | || |||| || || |||| |||||| || ||||| Sbjct 2243 GGTGAAAAGATCAAGTCGCTCGTTGTGCAGAAACGAAACTTGTTCAAGGCTAATGGAGA- 2185 Query 1376 CCTCACATTTGGTTGTTTGGAAACCCTGGATCCGGCAAGTCAGCCATTCTTCAAGTAATC 1435 || || | ||| | | || ||||| ||| || || || ||| | || ||| Sbjct 2184 CCCCATGTGTGGCTATGGGGTCTGCCTGGTACCGCAAAATCTGCGATTATGGGCGTGATC 2125 Query 1436 TACCCAGAATACTACAACAAGAACGTGGAGAACCGATTCTTCGATCGTTATCTTGACGGT 1495 || || || ||||||||||||||| |||| | || |||||||| | || || | Sbjct 2124 TATCCGGATTACTACAACAAGAACCTGGACACGCGTTTCTTCGACTGCTACAACGAGGAC 2065 Query 1496 CAACACTCCCACGTGCTTCTACAAGATGTCGACCATAATGTCATGGATAATTTGGGCGTT 1555 || || | ||| ||| | ||||| || ||||||||||| | || || ||||| || Sbjct 2064 CATCATACGCACTATCTTATGCAAGACGTGGACCATAATGTGGTTGAGAAGTTGGGTGTG 2005 Query 1556 CAATTCTTTAAGAGTGTGTGTGACGAAGCGGGCTACCCCATCGACGCCAAGTACAAGACC 1615 || || |||||| | || || ||| |||| ||||| ||||| | |||| || | Sbjct 2004 CAGTTTTTTAAGTCGATCTGCGATGAATCGGGGTACCCGATCGATGTGAAGTTTAAAGCG 1945 Query 1616 CCGCAGATCGCGCGACTCACGATCCTCATCTCGTCCAACTTCACCATTGAGGATGTCGTT 1675 | |||| | ||| | || || || | || ||||| ||| || |||||||| Sbjct 1944 GCCAAGATGGTCCGAATGACCATTCTTGTGACGAGTAACTTTTGCATCGACGATGTCGTG 1885 Query 1676 GCGGAAGAGATCAAAGGGAGACGCGAAAACGTCACTGCGCTTCAACGTCGATTTTGGCAG 1735 | ||||| | || | || || ||| | | || | | || || |||| || Sbjct 1884 CCAGAAGACTTGCCTGGTCGGCGTGAGAACCTTGCGGCTTTGAATCGGCGTTTTTTCCAA 1825 Query 1736 GTAAACATTCGTGACTTACTTCCTATTCTAGGTGTCAAGTTGTTGTCCAAGTATGAGATC 1795 || |||||||||||||| | || ||| | | ||| || | ||||||||| || Sbjct 1824 GTCAACATTCGTGACTTGTTGCCGATTTTGTCGTTGAAGATGATCAACAAGTATGAAATG 1765 Query 1796 ACCCAACTCAAGAAGGCGGGTAACCTCGACCCACGCAAGATCTTCCTCGCCTACGACTAT 1855 | | | || ||| ||||||| |||| | ||| |||| | | | |||| | Sbjct 1764 AACTTGTTGAAAAAGTCGGGTAATACGGACCTGAGAAAGCTCTTTATGTCGTGGGACTGT 1705 Query 1856 CTTCGTGATGTTCCAACTGG 1875 || |||||| ||| ||||| Sbjct 1704 CTGCGTGATTGTCCCACTGG 1685 >seq5597 Length=1406 Score = 100 bits (110), Expect = 7e-18 Identities = 126/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 896 TACGTTCTCGTCTCCGGTGTCGAAGTTGGCTCGCGTCCTTTCCAGGATGACTACCTCATC 955 |||||||| ||| ||||| ||| | ||| | || ||||| ||||||| ||| Sbjct 1143 TACGTTCTTGTCGGAGGTGTTGAAATCGGCACCAAGTCTACGCAGGACGACTACCAAATC 1202 Query 956 CGACATGTTCACCTCGCCCTTGTCTACAATAACCGAGTCACCAAGTCAAGCATTCTCAAA 1015 || ||||| ||| ||||| |||||||| ||||||||||||||||| || ||||| Sbjct 1203 CGCCATGTGCACTGTGCCCTCGTCTACAACAACCGAGTCACCAAGTCCTCGATCCTCAAG 1262 Query 1016 AACCTGGGGGTCAAGCAAGGAAATGGGTATTACCTGGTCCCACGCAAACGCGA 1068 ||||| ||| || ||||| || || || || || || ||||| || || || Sbjct 1263 AACCTCGGGATCGTCCAAGGGAACGGTTACTATCTTGTTCCACGAAACCGAGA 1315 >seq6625 Length=1094 Score = 89.7 bits (98), Expect = 1e-14 Identities = 110/148 (74%), Gaps = 2/148 (1%) Strand=Plus/Plus Query 1205 GAAGAAAAGAAACGCAAGCTTGATGACATCATCGTCGAAATGCGCCAACTCATCGAGGAA 1264 |||||||||||||||||| | ||||| || || ||||||||||| || || || || Sbjct 63 GAAGAAAAGAAACGCAAGATCGATGAAGTCCTCATCGAAATGCGCAGCCTGATTGAAGAC 122 Query 1265 GGCCGTGAAGAGGAGTCTTTTAGAAAG-TTTCCACGAAACCACCTAACGTATGGAGAAAA 1323 ||| ||| | || | || ||| | ||||| || | | |||| |||||| || || Sbjct 123 GGCAAAGAA-ACGATTGCCTTCGAACGCTTTCCTCGTACCTACCTGCAGTATGGCGAGAA 181 Query 1324 AATCAAGGCTATGGTCATGCAAAAGCGT 1351 ||||||||||||| | | ||||||||| Sbjct 182 AATCAAGGCTATGACCGTCCAAAAGCGT 209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 11982013820525