Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950855.1_202016-12-27] 60,602 sequences; 48,855,945 total letters Query= NC_022089.1 Length=3780 Score E Sequences producing significant alignments: (Bits) Value seq736 82.4 2e-12 seq830 80.6 6e-12 seq371 77.0 8e-11 >seq736 Length=4137 Score = 82.4 bits (90), Expect = 2e-12 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 978 TCTACAATAACCGAGTCACCAAGTCAAGCATTCTCAAAAACCTGGGGGTCAAGCAAGGAA 1037 ||||| ||||||||||| ||||| ||||| ||||| || | | |||||||||||| Sbjct 1188 TCTACCATAACCGAGTCTCCAAGAGTAGCATCCTCAAGAATTGGAAGATCAAGCAAGGAA 1247 Query 1038 ATGGGTATTACCTGGTCCCACGCAAACGCGAGTTTCCTTACAGCGGTTGGAAAAAACATC 1097 | || || || ||||| ||||| || || || || |||||| || ||| || || | Sbjct 1248 ACGGCTACTATCTGGTTCCACGGAACCGAGATTTGCCTTACTCAGGATGGCGAACTCACC 1307 Query 1098 ATACCAAG 1105 ||| |||| Sbjct 1308 ATAACAAG 1315 >seq830 Length=3936 Score = 80.6 bits (88), Expect = 6e-12 Identities = 109/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 1445 TACTACAACAAGAACGTGGAGAACCGATTCTTCGATCGTTATCTTGACGGTCAACACTCC 1504 ||||||||||||||| |||| | || |||||||| ||| || | || ||| | Sbjct 595 TACTACAACAAGAACCTGGACACTCGCTTCTTCGACTGTTTCAACGAAGAACATCACACG 536 Query 1505 CACGTGCTTCTACAAGATGTCGACCATAATGTCATGGATAATTTGGGCGTTCAATTCTTT 1564 ||| || || |||||||||||||| || || | || || | || || || ||||| Sbjct 535 CACTGTCTGCTGCAAGATGTCGACCACAACGTGTTAGAGAAGCTCGGTGTCCAGTTCTTC 476 Query 1565 AAGAGTGTGTGTGACGAAGCGGGCTACCCCAT 1596 |||| | | || || ||| ||||||||| ||| Sbjct 475 AAGAATATTTGCGATGAATCGGGCTACCTCAT 444 >seq371 Length=5393 Score = 77.0 bits (84), Expect = 8e-11 Identities = 121/171 (71%), Gaps = 2/171 (1%) Strand=Plus/Minus Query 896 TACGTTCTCGTCTCCGGTGTCGAAGTTGGCTCGC-GTCCTTTCCAGGATGACTACCTCAT 954 |||||||||||| |||| ||||| || | |||| ||| || ||||||| || Sbjct 2075 TACGTTCTCGTCGGAGGTGCTGAAGTCGGAACAAAGTCCAA-CCAAGACGACTACCAGAT 2017 Query 955 CCGACATGTTCACCTCGCCCTTGTCTACAATAACCGAGTCACCAAGTCAAGCATTCTCAA 1014 || || ||| |||| || |||||| || ||| ||||||||||| || ||||| Sbjct 2016 TGAGCACGTCCACGTCGCGCTCATCTACATTACCCGCGTCACCAAGTCCTCGATCCTCAA 1957 Query 1015 AAACCTGGGGGTCAAGCAAGGAAATGGGTATTACCTGGTCCCACGCAAACG 1065 ||||| | |||||||||| || || || || || || ||||| || || Sbjct 1956 GAACCTCGCCATCAAGCAAGGGAACGGTTACTATCTCGTTCCACGAAACCG 1906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 11976056592850