Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950875.1_202016-12-27] 13,060 sequences; 37,817,292 total letters Query= NC_022089.1 Length=3780 Score E Sequences producing significant alignments: (Bits) Value seq4439 241 3e-60 seq2230 129 1e-26 >seq4439 Length=1330 Score = 241 bits (266), Expect = 3e-60 Identities = 698/1068 (65%), Gaps = 6/1068 (1%) Strand=Plus/Minus Query 776 TTCGTTCCTTTCCACCACGTCGACCGCGAGTGGGATGCCCGCTTCAACGTACCAACTCAA 835 ||||| || | ||| ||||||||||| || |||||||| ||||||||||| ||||| || Sbjct 1195 TTCGTGCCGTACCATCACGTCGACCGTGAATGGGATGCGCGCTTCAACGTGCCAACCGAA 1136 Query 836 GAAGACCTCGATGTTATCGTCGCTTCCGTCAAGGCCGAAGTCCAAGCTGGTCG-GTTCAA 894 || || ||||| | || | | ||| ||| || || ||| | | || ||| Sbjct 1135 GAGGATCTCGAGCTACTCCTTCTGTGCGTGAAGAAGGA-GTATGAGCGAGGCAAGTACAA 1077 Query 895 GTACGTTCTCGTCTCCGGTGTCGAAGTTGGCTCGCGTCCTTTCCAGGATGACTACCTCAT 954 |||||| || ||||| || ||||||| ||| | | || |||| || |||||| | || Sbjct 1076 GTACGTGCTGGTCTCTGGCATCGAAGTCGGCACCCAGCCATTCCGCGACGACTACTTGAT 1017 Query 955 CCGACATGTTCACCTCGCCCTTGTCTACAATAACCGAGTCACCAAGTCAAGCATTCTCAA 1014 || || || ||| | |||| ||||| ||||| || | |||| || | || Sbjct 1016 GCGCCACGTGCACTGCTGTTTTGTGTACAACAACCGTGTGAGCAAGAGTGCTATCTTGAA 957 Query 1015 AAACCTGGGGGTCAAGCAAGGAAATGGGTATTACCTGGTCCCACGCAAACGCGAGTTTCC 1074 ||| || | | ||||| || || |||||||| || || |||||||| || ||| || Sbjct 956 GAACTTGAAGATTAAGCAGGGCAACGGGTATTATCTCGTGCCACGCAATCGAACGTTGCC 897 Query 1075 TTACAGCGGTTGGAAAAAACATCATACCAAGACCGAAACCAAAGTGGATGCCGCTTCTCT 1134 |||| || ||| | || || | |||| || || ||||| || ||| Sbjct 896 GTACAAAGGATGGCGTGACCACCACGCAAAGAA-GACACGAAAGTCGACGCCAACGAGAA 838 Query 1135 TTGCCTCTACGAGTACGGAATTCTACC--AACCGACCGTT-TGGCAGCAGTGGAATCCGC 1191 | | || ||| | || | || || || | | | | || | || || | | Sbjct 837 GATCTTGTATGAGAATGGCGTGCTCCCGCAAGATAAGGCTGTAGCTGAAGCTCAAGTCAC 778 Query 1192 GCCCCGTTCAGCCGAAGAAAAGAAACGCAAGCTTGATGACATCATCGTCGAAATGCGCCA 1251 || || || ||||||||||| || || || ||||| |||||| | | ||||| Sbjct 777 CTTGCGGTCCGCTGAAGAAAAGAAGCGAAAACTAGATGATATCATCATGAAGATGCGAGG 718 Query 1252 ACTCATCGAGGAAGGCCGTGAAGAGGAGTCTTTTAGAAAGTTTCCACGAAACCACCTAAC 1311 | ||||||||||| || || ||| | || | || || || || || |||| | Sbjct 717 CATGATCGAGGAAGGAAAAGACGAAGAGGCGTTCAAGAAATTCCCTCGGAATTACCTGAT 658 Query 1312 GTATGGAGAAAAAATCAAGGCTATGGTCATGCAAAAGCGTGACTTCTTCAAGAGCAAAGG 1371 |||||| ||||| |||||| || | || ||||||| || |||| |||||| || || Sbjct 657 GTATGGTGAAAAGATCAAGTCTCTCGTTGTGCAAAAACGAAACTTGTTCAAGGCTAACGG 598 Query 1372 AGATCCTCACATTTGGTTGTTTGGAAACCCTGGATCCGGCAAGTCAGCCATTCTTCAAGT 1431 ||| || | ||||| | | || ||||| | || || || || | | || Sbjct 597 AGACCCCTATGTTTGGCTTTGGGGTCTTCCTGGTACGGGTAAATCCGCACTGATGGGCGT 538 Query 1432 AATCTACCCAGAATACTACAACAAGAACGTGGAGAACCGATTCTTCGATCGTTATCTTGA 1491 |||||||| || || |||||||||||| |||| | |||||||||||| | ||| || Sbjct 537 CATCTACCCGGACTATTACAACAAGAACCTGGACACCCGATTCTTCGACTGCTATAACGA 478 Query 1492 CGGTCAACACTCCCACGTGCTTCTACAAGATGTCGACCATAATGTCATGGATAATTTGGG 1551 | || ||| | ||| || | || || || ||||| || || ||||| || | || Sbjct 477 GGAACATCACACGCACTGCCTGATGCAGGACGTGGACCAAAACGTTATGGAGAAGCTCGG 418 Query 1552 CGTTCAATTCTTTAAGAGTGTGTGTGACGAAGCGGGCTACCCCATCGACGCCAAGTACAA 1611 || || ||||| ||| ||| || || || |||| ||||| ||||| | || | || Sbjct 417 TGTCCAGTTCTTCAAGTCTGTATGCGATGAGTCGGGGTACCCGATCGATGTGAAATTTAA 358 Query 1612 GACCCCGCAGATCGCGCGACTCACGATCCTCATCTCGTCCAACTTCACCATTGAGGATGT 1671 | | | |||| | || | || ||||| || | ||||||| ||| || || || Sbjct 357 GGCTGCCAAGATGGTCCGTATGACCATCCTTGTCACTAGCAACTTCTGCATCGATGACGT 298 Query 1672 CGTTGCGGAAGAGATCAAAGGGAGACGCGAAAACGTCACTGCGCTTCAACGTCGATTTTG 1731 || ||||||| | || | || || || | |||| ||| ||| || || | Sbjct 297 GGTGCCGGAAGACTTGCCTGGTCGTCGTGAGAATTTGGCTGCTCTTTCACGACGCTTCTT 238 Query 1732 GCAGGTAAACATTCGTGACTTACTTCCTATTCTAGGTGTCAAGTTGTTGTCCAAGTATGA 1791 || || ||||||||||| | || || ||||| || | ||| || | ||||||||| Sbjct 237 CCAAGTCAACATTCGTGATCTTCTGCCCATTCTGGGCCTTAAGATGATCAACAAGTATGA 178 Query 1792 GATCACCCAACTCAAGAAGGCGGGTAACCTCGACCCACGCAAGATCTT 1839 | | | | | |||||| || ||| || || |||||| |||| Sbjct 177 GCTGAACTTGTTGAAGAAGAGTGGCAACACGGATCCGCGCAAGCTCTT 130 >seq2230 Length=3299 Score = 129 bits (142), Expect = 1e-26 Identities = 304/447 (68%), Gaps = 18/447 (4%) Strand=Plus/Minus Query 896 TACGTTCTCGTCTCCGGTGTCGAAGTTGGCTCGC-GTCCTTTCCAGGATGACTACCTCAT 954 |||||||| ||| ||||| || | ||| | |||| ||| || ||||||| || Sbjct 2958 TACGTTCTTGTCGGAGGTGTTGAGATCGGCACCAAGTCCAA-CCAAGACGACTACCAAAT 2900 Query 955 CCGACATGTTCACCTCGCCCTTGTCTACAATAACCGAGTCACCAAGTCAAGCATTCTCAA 1014 | || || ||| ||||| ||||| || ||||| ||||||||||| ||||| ||||| Sbjct 2899 CGAGCACGTGCACTGTGCCCTCGTCTATAACAACCGCGTCACCAAGTCGAGCATCCTCAA 2840 Query 1015 AAACCTGGGGGTCAAGCAAGGAAATGGGTATTACCTGGTCCCACGCAAACGCGAGTTT-C 1073 ||||| || |||||||||| || || || || || || ||||| || || ||| | | Sbjct 2839 GAACCTCGGCATCAAGCAAGGGAACGGTTACTATCTCGTTCCACGGAACCGA-AGTCTGC 2781 Query 1074 CTTACAGCGGTTGGAAAAAACATCATACCAAGACCGAAACCAAAGTGGATGC-CGCTTCT 1132 |||||||||| ||| || |||| |||| | | |||| || ||| | || Sbjct 2780 CTTACAGCGGATGGCGTTCTCACCATATCAAGTCGCACTCCAAGGTCGATCCAAGCAAGG 2721 Query 1133 CTTTGCCTCTACGAGTACGGAATTCTACCAACCGA--CCGTTTGGCAGCAGTGGAATCCG 1190 | | ||||||||| | || || ||| || || || |||| | | Sbjct 2720 CCAT-CCTCTACGAACAAGGCTCGCTCCCAGAAGATGACGCTTCACAGCGCT------CT 2668 Query 1191 CGCCCCGTTCAGCCGAAGAAAAGAAACGCAAGCTTGATGACATCATCGTCGAAATGCGCC 1250 || | || || ||||||||||| ||||| | || || || ||||||||||||||| Sbjct 2667 CGTCTCG--GAGAAGAAGAAAAGAAGCGCAAAATCGACGAAGTCCTCGTCGAAATGCGCC 2610 Query 1251 AACTCATCGAGGAAGGCCGTGAAG-AGGAGTCTTTTAGAAAGTTTCCACGAAACCACCTA 1309 | |||||||| ||||| | || | | || ||| || ||| || || ||| | || Sbjct 2609 ACCTCATCGAAGAAGGTCAAGATGAACTAGCGTTTGAG-CGGTTCCCGCGCAACTATCTC 2551 Query 1310 ACGTATGGAGAAAAAATCAAGGCTATG 1336 ||||||||| || |||||||| ||| Sbjct 2550 CAGTATGGAGAGAAGATCAAGGCCATG 2524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 11982288160500