Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950895.1_202016-12-27] 22,560 sequences; 37,673,126 total letters Query= NC_022089.1 Length=3780 Score E Sequences producing significant alignments: (Bits) Value seq2454 102 2e-18 seq5335 86.0 2e-13 seq4863 82.4 2e-12 >seq2454 Length=3891 Score = 102 bits (112), Expect = 2e-18 Identities = 263/398 (66%), Gaps = 12/398 (3%) Strand=Plus/Minus Query 938 CAGGATGACTACCTCATCCGACATGTTCACCTCGCCCTTGTCTACAATAACCGAGTCACC 997 || || ||||||| ||||| || || ||| | | || ||||| | ||||| || || Sbjct 2835 CAAGACGACTACCAAATCCGTCACGTGCACGCCTGCATTATCTACCACAACCGTGTGTCC 2776 Query 998 AAGTCAAGCATTCTCAAAAACCTGGGGGTCAAGCAAGGAAATGGGTATTACCTGGTCCCA 1057 ||||| ||| ||| ||||| | | ||||||||||||| || || || ||||| ||| Sbjct 2775 AAGTCGTCCATCCTCGAAAACTGGAAGATCAAGCAAGGAAACGGCTACTATCTGGTTCCA 2716 Query 1058 CGCAAACGCGAGTTTCCTTACAGCGGTTGGAAAAAACATCATACCAAGACCGAAACCAAA 1117 || || || || || |||||| ||| ||| || |||| |||| |||| Sbjct 2715 CGGAACCGAGATTTGCCTTACTCCGGATGGCGCGCTCACCATATCAAGGAGTTCTCCAAG 2656 Query 1118 GTGG---ATGCCGCTTCTCTTTGCCTCTACGAGTACGGAATTCTACCAACCGACCGTTTG 1174 | | | | | | | | ||||||||| | |||| ||| || ||||| | Sbjct 2655 ATCGACAAGGAAGAATGTAT---CCTCTACGAAGAGGGAACTCTTCCCGCCGAC--GAAG 2601 Query 1175 GCAGCAGTGGAATCCGCGCCCCGTTCAGCCGAAGAAAAGAAACGCAAGCTTGATGACATC 1234 | |||| |||||||| || | |||||||| || ||||| |||| || ||| Sbjct 2600 GAAGCACGTACGTCCGCGCC----TCTACGGAAGAAAAAAAGCGCAAAATTGACGAAATC 2545 Query 1235 ATCGTCGAAATGCGCCAACTCATCGAGGAAGGCCGTGAAGAGGAGTCTTTTAGAAAGTTT 1294 |||||||||||||| ||||| || | | | ||||| | || || ||| Sbjct 2544 CTCGTCGAAATGCGCATGCTCATTGAAGCCGACAAGGAAGACCTCGCCTTCGAAAGGTTC 2485 Query 1295 CCACGAAACCACCTAACGTATGGAGAAAAAATCAAGGC 1332 ||||||||| | || | ||| |||||||| | ||||| Sbjct 2484 CCACGAAACTATCTCATGTACGGAGAAAAGTTGAAGGC 2447 >seq5335 Length=1935 Score = 86.0 bits (94), Expect = 2e-13 Identities = 232/348 (67%), Gaps = 14/348 (4%) Strand=Plus/Minus Query 1007 ATTCTCAAAAACCTGGGGGTCAAGCAAGGAAATGGGTATTACCTGGTCCCACGCAAACGC 1066 || ||||| ||||| || |||||||||| || || || || || || ||||| || | Sbjct 1361 ATCCTCAAGAACCTCGGCATCAAGCAAGGGAACGGTTACTATCTCGTTCCACGGAACCTA 1302 Query 1067 GAGTTTCCTTACAGCGGTTGGAAAAAACATCATACCAAGACCGAAACCAAAGTGGATGCC 1126 | | ||||||||||| ||| || |||| |||| | | | |||||| |||||| Sbjct 1301 AATCTGCCTTACAGCGGATGGCGTGCTCACCATATCAAGTCGCACAGCAAAGTCGATGCC 1242 Query 1127 G-CTTCTCTTTGCCTCTACGAGTACGGAATTCTACCAACCGAC--CGTTTGGCAGCAGTG 1183 | | | ||||||||| | || || ||| || || || |||| | Sbjct 1241 AACAAGGCCAT-CCTCTACGAACAAGGCTCGCTCCCAGAAGATGACGCTTCACAGCGCT- 1184 Query 1184 GAATCCGCGCCCCGTTCAGCCGAAGAAAAGAAACGCAAGCTTGATGACATCATCGTCGAA 1243 | || | || || |||||||||| ||||| | || || || |||||||| Sbjct 1183 -----CTCGTCTCGG--AGAAGAAGAAAAGATGCGCAAAATCGACGAAGTCCTCGTCGAA 1131 Query 1244 ATGCGCCAACTCATCGAGGAAGGCCGTGAAG-AGGAGTCTTTTAGAAAGTTTCCACGAAA 1302 ||||||| |||||||| ||||| | || | | || |||| || ||| || || || Sbjct 1130 ATGCGCCGGCTCATCGAAGAAGGTCAAGATGAACTAGCCTTTGAG-CGGTTCCCGCGCAA 1072 Query 1303 CCACCTAACGTATGGAGAAAAAATCAAGGCTATGGTCATGCAAAAGCG 1350 | | || ||||||||| ||||||||||| ||| ||||||||| Sbjct 1071 CTATCTCCAGTATGGAGAGAAAATCAAGGCCATGTGTGCGCAAAAGCG 1024 >seq4863 Length=2135 Score = 82.4 bits (90), Expect = 2e-12 Identities = 102/136 (75%), Gaps = 8/136 (6%) Strand=Plus/Minus Query 1205 GAAGAAAAGAAACGCAAGCTTGATGACATCATCGTCGAAATGCGCCAACTCATCGAGGAA 1264 |||||||| || |||||| | || || || |||| |||||||||||||||||||| ||| Sbjct 2109 GAAGAAAAAAAGCGCAAGATCGACGAAGTCCTCGTTGAAATGCGCCAACTCATCGAAGAA 2050 Query 1265 GGCCGTGAAGAGGAGTCT---TTTAGAAAG-TTTCCACGAAACCACCTAACGTATGGAGA 1320 |||| |||| || || || || | ||||| || ||| | || ||||||||| Sbjct 2049 GGCC---AAGATGA-ACTAGCGTTCGAGCGTTTTCCTCGCAACTATCTCCAGTATGGAGA 1994 Query 1321 AAAAATCAAGGCTATG 1336 || |||||||| ||| Sbjct 1993 GAAGATCAAGGCCATG 1978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 11981042948000