Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950915.1_202016-12-27] 14,576 sequences; 35,372,432 total letters Query= NC_022089.1 Length=3780 Score E Sequences producing significant alignments: (Bits) Value seq5288 120 7e-24 seq3301 93.3 1e-15 >seq5288 Length=1450 Score = 120 bits (132), Expect = 7e-24 Identities = 287/423 (68%), Gaps = 22/423 (5%) Strand=Plus/Minus Query 937 CCAGGATGACTACCTCATCCGACATGTTCACCTCGCCCTTGTCTACAATAACCGAGTCAC 996 ||| || ||||| | ||| ||| || ||| ||| || |||||||| ||||| ||||| Sbjct 1320 CCAAGACGACTATCAGATCGAACACGTCCACTGCGCGCTCGTCTACAACAACCGGGTCAC 1261 Query 997 CAAGTCAAGCATTCTCAAAAACCTGGGGGTCAAGCAAGGAAATGGGTATTACCTGGTCCC 1056 |||||| ||| ||||| ||||| || |||||||||| ||||| || || || || || Sbjct 1260 CAAGTCGTCCATCCTCAAGAACCTCGGAATCAAGCAAGGTAATGGCTACTATCTTGTTCC 1201 Query 1057 ACGCAAACGCGAGTTT-CCTTACAGCGGTTGGAAAAAACATCATACCAAGACCGAAACCA 1115 ||| || | ||||| ||||||||||| ||| || |||| ||||| | | | | Sbjct 1200 ACGGAACAGA-AGTTTGCCTTACAGCGGATGGCGTGCTCACCATATCAAGAGCCACTCAA 1142 Query 1116 AAGTGGATGCCGCTTCTCTTTGCCTCTACGAGTACGGAATTCTACCAACCGA--CCGTTT 1173 |||| ||| | | ||||||||| | || || ||| || || || Sbjct 1141 AAGTCGATCCGACCAAGAACATCCTCTACGAACAAGGCTCGCTCCCAGAAGATGACGCTT 1082 Query 1174 GGCAGCAGTGGAATCCGCGCCCCGTTCAGCCGAAGAAAAGAAACGCAAGCTTGATGACAT 1233 |||| | | || | || || |||||||| || |||||| | ||||| | Sbjct 1081 CACAGCGCT------CTCGTCTCG--GAGAAGAAGAAAAAAAGCGCAAGATCGATGAAGT 1030 Query 1234 CATCGTCGAAATGCGCCAACTCATCGAGGAAGGCCGTGAAGAGGAGTCT---TTTAGAAA 1290 | | ||||||||||| || |||||||| |||| || |||| || || || || Sbjct 1029 CCTAGTCGAAATGCGTCAGCTCATCGAAGAAG---GTCAAGACGA-ACTAGCGTTCGAGC 974 Query 1291 G-TTTCCACGAAACCACCTAACGTATGGAGAAAAAATCAAGGCTATG-GTCATGCAAAAG 1348 | ||||| || ||| | | ||||||||| || |||||||| ||| || | |||||| Sbjct 973 GTTTTCCTCGCAACTATATCCAGTATGGAGAGAAGATCAAGGCCATGTGTGCT-CAAAAG 915 Query 1349 CGT 1351 ||| Sbjct 914 CGT 912 >seq3301 Length=2826 Score = 93.3 bits (102), Expect = 1e-15 Identities = 102/133 (77%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 1205 GAAGAAAAGAAACGCAAGCTTGATGACATCATCGTCGAAATGCGCCAACTCATCGAGGAA 1264 |||||||| || ||||| |||| || || |||| |||||||||||||||||||| ||| Sbjct 2616 GAAGAAAAAAAGCGCAAAATTGACGAAGTCCTCGTTGAAATGCGCCAACTCATCGAAGAA 2557 Query 1265 GGCCGTGAAGAGGAGTCTTTTAGAAAG-TTTCCACGAAACCACCTAACGTATGGAGAAAA 1323 || | || ||| | ||| ||| | ||||| || ||| | || |||||||||||| Sbjct 2556 GGTCAAGATGAGCTAGCGTTT-GAACGCTTTCCTCGGAACTATCTCCAGTATGGAGAAAA 2498 Query 1324 AATCAAGGCTATG 1336 |||||||| ||| Sbjct 2497 GATCAAGGCCATG 2485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 11982089450800