Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950935.1_202016-12-27] 11,084 sequences; 34,541,218 total letters Query= NC_022089.1 Length=3780 Score E Sequences producing significant alignments: (Bits) Value seq2534 190 5e-45 seq4014 114 3e-22 >seq2534 Length=3429 Score = 190 bits (210), Expect = 5e-45 Identities = 452/681 (66%), Gaps = 9/681 (1%) Strand=Plus/Minus Query 1196 CGTTCAGCCGAAGAAAAGAAACGCAAGCTTGATGACATCATCGTCGAAATGCGCCAACTC 1255 || || || ||||||||||| || || ||||||||||||||| | || ||| | | Sbjct 3217 CGGTCGGCGGAAGAAAAGAAGCGAAAACTTGATGACATCATCATGGATATGAGAGGTATG 3158 Query 1256 ATCGAGGAAGGCCGTGAAGAGGAGTCTTTTAGAAAGTTTCCACGAAACCACCTAACGTAT 1315 || || |||||| || || ||| | || | || || ||| | || |||| |||||| Sbjct 3157 ATTGAAGAAGGCAAAGATGAAGAGGCGTTCAAGAAATTCCCAAGGAAATACCTGACGTAT 3098 Query 1316 GGAGAAAAAATCAAGGCTATGGTCATGCAAAAGCGTGACTTCTTCAAGAGCAAAGGAGAT 1375 || ||||| |||||| || ||||| | || ||| | |||||| || ||||| Sbjct 3097 GGTGAAAAGATCAAGTCTCTGGTCGTCCA-------GACCTGTTCAAGGCTAACGGAGAC 3045 Query 1376 CCTCACATTTGGTTGTTTGGAAACCCTGGATCCGGCAAGTCAGCCATTCTTCAAGTAATC 1435 || || | ||||||| || || || | | || || || || | || ||| Sbjct 3044 CCCCATGTGTGGTTGTGGGGTCTTCCAGGTACGGATAAATCGGCTCTTATGGGCGTGATC 2985 Query 1436 TACCCAGAATACTACAACAAGAACGTGGAGAACCGATTCTTCGATCGTTATCTTGACGGT 1495 ||||| || ||||||||||||||| | || | ||| || ||||| | || || | Sbjct 2984 TACCCCGACTACTACAACAAGAACCTAGACACCCGTTTTTTCGACTGCTACAACGAAGAA 2925 Query 1496 CAACACTCCCACGTGCTT-CTACAAGATGTCGACCATAATGTCATGGATAATTTGGGCGT 1554 || || | || ||||| | ||||||||||| || || || | || || ||||| || Sbjct 2924 CATCATACGCA-TTGCTTGATGCAAGATGTCGATCACAACGTTGTCGAAAAATTGGGTGT 2866 Query 1555 TCAATTCTTTAAGAGTGTGTGTGACGAAGCGGGCTACCCCATCGACGCCAAGTACAAGAC 1614 || ||||| ||| ||| || ||||| |||| ||||| ||||| | ||||| |||| | Sbjct 2865 CCAGTTCTTCAAGTCTGTTTGCGACGAGTCGGGGTACCCGATCGATGTCAAGTTCAAGGC 2806 Query 1615 CCCGCAGATCGCGCGACTCACGATCCTCATCTCGTCCAACTTCACCATTGAGGATGTCGT 1674 | |||| | || | || || || | | |||||| ||| || || ||||| Sbjct 2805 AGCCAAGATGGTCCGCATGACCATTCTTGTGACCGGTAACTTCTGCATCGACGACGTCGT 2746 Query 1675 TGCGGAAGAGATCAAAGGGAGACGCGAAAACGTCACTGCGCTTCAACGTCGATTTTGGCA 1734 ||||||| | || | || || ||| | | || || |||||| |||| || Sbjct 2745 GCCGGAAGACTTGCCGGGACGTCGTGAGAACCTTGCGGCTCTCTCACGTCGTTTTTTTCA 2686 Query 1735 GGTAAACATTCGTGACTTACTTCCTATTCTAGGTGTCAAGTTGTTGTCCAAGTATGAGAT 1794 |||||||| || || | | || || || || | ||| || | ||||||||| | Sbjct 2685 AGTAAACATCCGGGATCTCTTGCCGATCCTCGGATTGAAGATGATCAACAAGTATGAACT 2626 Query 1795 CACCCAACTCAAGAAGGCGGGTAACCTCGACCCACGCAAGATCTTCCTCGCCTACGACTA 1854 || | | |||||||| |||||| ||||||| ||| |||| | | ||||| Sbjct 2625 CAACTTGTTGAAGAAGGCCGGTAACACCGACCCAAAAAAGCTCTTTATGAGTTGGGACTA 2566 Query 1855 TCTTCGTGATGTTCCAACTGG 1875 ||| || ||| ||| || || Sbjct 2565 TCTGCGCGATTGTCCCACGGG 2545 >seq4014 Length=1721 Score = 114 bits (126), Expect = 3e-22 Identities = 145/194 (75%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 896 TACGTTCTCGTCTCCGGTGTCGAAGTTGGCTCGC-GTCCTTTCCAGGATGACTACCTCAT 954 |||||||| ||| ||||| ||||| ||| | |||| ||| || ||||||| || Sbjct 499 TACGTTCTTGTCGGAGGTGTTGAAGTCGGCACCAAGTCCAA-CCAAGACGACTACCAGAT 557 Query 955 CCGACATGTTCACCTCGCCCTTGTCTACAATAACCGAGTCACCAAGTCAAGCATTCTCAA 1014 ||| || ||| | |||| |||||||| ||||| ||||||||||| ||| ||||| Sbjct 558 TGAACACGTCCACGTTACCCTCGTCTACAACAACCGCGTCACCAAGTCGTCCATCCTCAA 617 Query 1015 AAACCTGGGGGTCAAGCAAGGAAATGGGTATTACCTGGTCCCACGCAAACGCGAGT-TTC 1073 ||||| || |||||||||| ||||| || || || || ||||| || || ||| | | Sbjct 618 GAACCTCGGCATCAAGCAAGGGAATGGTTACTATCTCGTTCCACGGAACCG-AAGTCTGC 676 Query 1074 CTTACAGCGGTTGG 1087 |||||||||| ||| Sbjct 677 CTTACAGCGGATGG 690 Score = 89.7 bits (98), Expect = 1e-14 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 1205 GAAGAAAAGAAACGCAAGCTTGATGACATCATCGTCGAAATGCGCCAACTCATCGAGGAA 1264 |||||||| || ||||| | || || || |||| |||||||||||||||||||| ||| Sbjct 886 GAAGAAAAAAAGCGCAAAATCGACGAAGTCCTCGTTGAAATGCGCCAACTCATCGAAGAA 945 Query 1265 GGCCGTGAAGAGGAGTCTTTTAGAAAGTTTCCACGAAACCACCTAACGTATGGAGAAAAA 1324 || | || || | ||| | |||||| || ||| | ||| |||||||||||| Sbjct 946 GGTCAAGATGAACTAGCGTTTGAACGGTTTCCTCGCAACTATCTACAGTATGGAGAAAAG 1005 Query 1325 ATCAAGGCTATG 1336 |||||||| ||| Sbjct 1006 ATCAAGGCGATG 1017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 11982547164700