Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG41- 1_20[genbank_20GCA_5F900128575.1_202016-12-02] 9,021 sequences; 30,044,774 total letters Query= NC_001330.1 Length=6087 Score E Sequences producing significant alignments: (Bits) Value seq2011 315 3e-82 seq4720 194 6e-46 >seq2011 Length=1498 Score = 315 bits (348), Expect = 3e-82 Identities = 233/272 (86%), Gaps = 0/272 (0%) Strand=Plus/Minus Query 2560 CAGGCTAGTGCTGTTTTGGATGTTACTGAGGAAGATTTCGATTTTCTGACTGGTGATAAG 2619 |||||| ||| ||||||||| | || || || ||||||||||||||||| || | || Sbjct 282 CAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACAAA 223 Query 2620 ATTTGGATTGCTACCGACCGTAACCGTGCGCGTCGTTGTGTTGAGGCTTGTGTTTATGGA 2679 ||||||||||||| ||||| ||||| ||||| || ||||||||||| |||||||| Sbjct 222 GTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTATGGT 163 Query 2680 ACGCTGGACTTTGTTGGATATCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTC 2739 |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 162 ACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTC 103 Query 2740 ATTGCTTATTATGTTCATCCCGTCAATGTACAAACAGCATGCCTCGTTATGGAAGGCGCG 2799 |||||||||||||||||||||||||| | ||||| || || ||| | ||||||||||| Sbjct 102 ATTGCTTATTATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCGCT 43 Query 2800 GAGTTTAGCGAAAACATTATCAATGGCGTCGA 2831 || |||| ||||||||||| ||||||||||| Sbjct 42 GAATTTACGGAAAACATTATTAATGGCGTCGA 11 Score = 123 bits (136), Expect = 1e-24 Identities = 233/338 (69%), Gaps = 6/338 (2%) Strand=Plus/Minus Query 1353 GAAAACCCCAATGCTCTTCGTGATTATTTCAGGACTGTTGGTCGAGCTGTTCTGCGCGCT 1412 || || |||| |||| | ||||| ||||| | | ||||||| ||||| || Sbjct 1498 GATAATCCCATTGCTTTCCGTGACTATTTTCGTGATATTGGTCGTATGGTTCTTGCTGCC 1439 Query 1413 GAAGGTCGTTCGGTCAAGGATTCCTACAACGACTGCTATCGCTATCTTTGTGTGCCGGAG 1472 | || || || || ||||| || ||||||||||| ||| |||||||||| ||| Sbjct 1438 GGGGGCCGCAAGGCTAATGATTCACACGCCGACTGCTATCAGTATTTTTGTGTGCCTGAG 1379 Query 1473 TTTGGAGGTCAGC--ACGGCCGTCTTCATTGGCACGTTGTGCATATGGTGCGGACTCTTC 1530 | ||| |||| | ||||||||||||| || | ||||| | ||||| | |||| Sbjct 1378 TATGGTA--CAGCTAATGGCCGTCTTCATTTCCATGCGGTGCACTTTATGCGGCCACTTC 1321 Query 1531 CTTTGGGAAGTCATGACCCTAATTTCGGTCGCAAGGTACGTAATTATCGCCAGATTAACT 1590 || || || |||||||||||| ||||| |||||| ||| |||||| |||| | Sbjct 1320 CTACAGGTAGCGTTGACCCTAATTTTGGTCGTCGGGTACGCAATCGCCGCCAG-TTAAAT 1262 Query 1591 CG-TTCCGTGGCATGTGGCCTTATGGCTTCACGCAACCGATAGCTGTTCGCTATCAACAT 1649 | || | | |||||||||||| | || || || || |||||||| || Sbjct 1261 AGCTTGCAAAATACGTGGCCTTATGGTTACAGTATGCCCATCGCAGTTCGCTACACGCAG 1202 Query 1650 GACGCTTATTCCCGCAAAGGTTGGCTGTGGCCTGTTGA 1687 ||||||| ||| || |||||| ||||||||||||| Sbjct 1201 GACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTTGA 1164 >seq4720 Length=582 Score = 194 bits (214), Expect = 6e-46 Identities = 253/344 (74%), Gaps = 11/344 (3%) Strand=Plus/Plus Query 2987 CGTAAAGGTGCTCGCCTCTGGTATGTAGGCGGTTCTCAGTTTTAATTATGGGCCCTTCGG 3046 |||||||| ||||| || ||||||||||| ||| || |||||||| || |||||| Sbjct 204 CGTAAAGGCGCTCGTCTTTGGTATGTAGGTGGTCAACAATTTTAATTGCAGGGGCTTCGG 263 Query 3047 GGCCTT--TTAAGGA--AATTCAAATGTCTAATGTACAAACTTCCGCTGAACGTGAAATT 3102 |||| || |||| |||| ||||||||| | |||||| ||| || ||| Sbjct 264 CCCCTTACTTGAGGATAAATT---ATGTCTAATATTCAAACTGGCGCCGAGCGTATGCCG 320 Query 3103 GTTGACCTCTCTCATCTTGCCTT--TGACTGTGGCATGCTTGGTCGTCTGAAGACTGTTT 3160 |||||| || ||||||| ||| | ||| | || | |||||||||| | || ||| Sbjct 321 CATGACCTTTCCCATCTTGGCTTCCTTGCTG-GTCA-GATTGGTCGTCTTATTACCATTT 378 Query 3161 CATGGACTCCTGTTATCGCTGGCGATTCCTTTGAGCTTGATGCTGTTGGTGCTTTGCGTC 3220 || ||||| |||||||||||||| ||||| ||| | || || ||||| | | | |||| Sbjct 379 CAACTACTCCGGTTATCGCTGGCGACTCCTTCGAGATGGACGCCGTTGGCGATCTCCGTC 438 Query 3221 TTTCCCCTCTGCGTCGTGGTTTAGCTATTGATTCTAAGGTTGATTTTTTCACCTTCTACA 3280 |||| || |||||||||| | |||||||| |||| || || |||| || || || Sbjct 439 TTTCTCCATTGCGTCGTGGCCTTGCTATTGACTCTACTGTAGACATTTTTACTTTTTATG 498 Query 3281 TTCCGCATCGTCATGTTTATGGCGACCAGTGGATTCAGTTTATG 3324 | || |||||||| |||||||| || ||||||||| |||| ||| Sbjct 499 TCCCTCATCGTCACGTTTATGGTGAACAGTGGATTAAGTTCATG 542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19361234901444