Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG41- 1_20[genbank_20GCA_5F900128575.1_202016-12-02] 9,021 sequences; 30,044,774 total letters Query= NC_001420.2 Length=5577 Score E Sequences producing significant alignments: (Bits) Value seq2011 1047 0.0 seq7100 143 9e-31 seq4720 131 6e-27 seq8774 125 3e-25 seq7334 87.8 6e-14 >seq2011 Length=1498 Score = 1047 bits (1160), Expect = 0.0 Identities = 1142/1505 (76%), Gaps = 15/1505 (1%) Strand=Plus/Minus Query 824 GATAATCCCAATGCTCTTCGTGACTACTTCCGTGATATTGGTCGTATGGTGCTTACTGCC 883 |||||||||| |||| | |||||||| || |||||||||||||||||||| ||| ||||| Sbjct 1498 GATAATCCCATTGCTTTCCGTGACTATTTTCGTGATATTGGTCGTATGGTTCTTGCTGCC 1439 Query 884 GAAGGTCGCTCGGTGCATGACTCATCTTCCGACTGCTATCAGTATTTTTGTGTGCCAGAG 943 | || ||| || |||| ||| |||||||||||||||||||||||||||| ||| Sbjct 1438 GGGGGCCGCAAGGCTAATGATTCACACGCCGACTGCTATCAGTATTTTTGTGTGCCTGAG 1379 Query 944 TATGGTACACAGCACGGTCGTCTACATTTCCACGCAGTGCATCTTATGCGCACACTTCCT 1003 ||||||||| | || ||||| |||||||| || ||||| ||||||| |||||||| Sbjct 1378 TATGGTACAGCTAATGGCCGTCTTCATTTCCATGCGGTGCACTTTATGCGGCCACTTCCT 1319 Query 1004 CTGGGTTCTCTGCACCCTAACTTCGGTAAGCTGGTACGCATCAATCGGCAAATAAATAGC 1063 ||| | ||||||| || ||| | |||||||| || || |||||||| Sbjct 1318 ACAGGTAGCGTTGACCCTAATTTTGGTCGTCGGGTACGCAATCGCCGCCAGTTAAATAGC 1259 Query 1064 TTGCAAAACACGTGGCCTTATGGTTACTCTATGCCCATCGCAGTCCGGTACTCCCAAGAC 1123 |||||||| |||||||||||||||||| ||||||||||||||| || ||| | || ||| Sbjct 1258 TTGCAAAATACGTGGCCTTATGGTTACAGTATGCCCATCGCAGTTCGCTACACGCAGGAC 1199 Query 1124 GCATTCTCTCGCGCTGGCTGGCTCTGGCCTGTGGACTCAAAGGGTGAACCCCTTAAAGCT 1183 || || || || |||| ||| | |||||||| || | || ||||| || ||||||||| Sbjct 1198 GCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTTGATGCTAAAGGTGAGCCGCTTAAAGCT 1139 Query 1184 ACCTCGTATATGGCTGTAGGCTTCTACGTTGCTAAATACGTTAACAAAAAATCAGATATT 1243 ||| ||||||||||| || ||||| || |||||||||||||||||||| |||||||| Sbjct 1138 ACCAGTTATATGGCTGTTGGTTTCTATGTGGCTAAATACGTTAACAAAAAGTCAGATATG 1079 Query 1244 GACATGGCCGTAAAAGGCCTAGGGAATAAAGAATGGAACAATTCACTCAAAACCAAAATC 1303 ||| | || | ||||| ||||| ||||||||||||||| ||||| |||||||| | Sbjct 1078 GACCTTGCTGCTAAAGGTCTAGGAGCTAAAGAATGGAACAACTCACTAAAAACCAAGCTG 1019 Query 1304 AACCTCATACCCAAGAAAGTGTTCAGAATACGAATGTCTCGCAATTTCGGAATGAAACTG 1363 || | |||||||| |||||||||| ||||| ||||| ||||| |||||| || Sbjct 1018 TCGCTACTTCCCAAGAAGCTGTTCAGAATCAGAATGAGCCGCAACTTCGGGATGAAAATG 959 Query 1364 TTATCAATGGCTCACCTGTCAGCGGAAACCCTGATGGAACTGACCCAAGTGGGTTACGAC 1423 | ||||| | | ||||| |||| | | || |||| ||| | ||||||||||| Sbjct 958 CTCACAATGACAAATCTGTCCACGGAGTGCTTAATCCAACTTACCAAGCTGGGTTACGAC 899 Query 1424 GTGACCCCGTTCAACAACATCTTGAAGCAGAACGCCAAGAAAGAGCTCAAATCGAGGCTG 1483 | ||| ||||||||| | || |||||||||||||| || | |||| | | || ||||||| Sbjct 898 GCGACGCCGTTCAACCAGATATTGAAGCAGAACGCAAAAAGAGAGATGAGATTGAGGCTG 839 Query 1484 GCAAAGAAATCTGTCGCCGACGTTTTGGAGGCGCAACCTGTGACGACGAATCTGCTAAAA 1543 | ||| |||| ||||||||||||| |||||||||||||||||| |||||||| ||| Sbjct 838 GGAAAAGTTACTGTAGCCGACGTTTTGGCGGCGCAACCTGTGACGACAAATCTGCTCAAA 779 Query 1544 TTCATGCGCAATTTGACCCGAACAATCGGAGCGTCCAACCTACAGAGTTTTATCGCTTCA 1603 || |||||| || || || || || | |||||||| ||||||||||||||||| Sbjct 778 TTTATGCGCGCTTCGATAAAAATGATTGGCGTATCCAACCTGCAGAGTTTTATCGCTTCC 719 Query 1604 ATGACCACGAAATTAACAAGTACGGATATTTCTGATGAAACCAAAAACTACGTTGCTTCT 1663 ||||| ||| |||||| | |||||||||||||||| | ||||| || ||| | Sbjct 718 ATGACGCAGAAGTTAACACTTTCGGATATTTCTGATGAGTCGAAAAATTATCTTGATAAA 659 Query 1664 GCAGGAATTGCTGTTGCTAACTTACGAATTAAATCGAAGTGGACTGCTGGTGGAAAATGA 1723 ||||||||| || |||| ||||||||||||||||||||||||||||| ||||||||| Sbjct 658 GCAGGAATTACTACTGCTTGTTTACGAATTAAATCGAAGTGGACTGCTGGCGGAAAATGA 599 Query 1724 GGAAATTCAATCTCAACTTAAAAAACTCGAGGTCGTCTTACTTTGCAACCTTTCGCCATC 1783 | |||||| | || ||| | |||||| ||||||||||| ||||||||||||| Sbjct 598 GAAAATTCGACCTATCCTTGCGCAGCTCGAGAAGCTCTTACTTTGCGACCTTTCGCCATC 539 Query 1784 ATCTCAACG-TGCTGGCAAAAACTGACGCCCTTGACGAGGAGAAATACTTAAATATGTTA 1842 | || |||| | ||| ||||||||||||| | || |||||||| | | |||||| | Sbjct 538 AACT-AACGATTCTGTCAAAAACTGACGCGTTGGATGAGGAGAAGTGGCTTAATATGCTT 480 Query 1843 GGTGCTCTCCTCAAGGACTGGTTCCGGTACGAAGAACATTTCGTGCATGGTAAACAATCA 1902 || | || ||||||||||||| | || || |||||| || ||||||| | | || Sbjct 479 GGCACGTTCGTCAAGGACTGGTTTAGATATGAGTCACATTTTGTTCATGGTAGAGATTCT 420 Query 1903 ATGCTTGACATACTGAAAGAACGTGGCCTATTATCCACATCGTCAACTGACACAAACCAC 1962 | ||||||| | ||||| ||||| || |||| || ||| |||||| Sbjct 419 CTTGTTGACATTTTAAAAGAGCGTGGATTACTATCTGAGTCCGATGCTG--TTCAACCAC 362 Query 1963 --AAAGGAAACTGAAATGTCTAAATCAA---AC-GAATCTGCTGTAGCCTTTCAAACTGC 2016 | ||| || ||||| | | |||| || ||| | || || || || || Sbjct 361 TAATAGGTAA--GAAAT-CATGAGTCAAGTTACTGAACAATCCGTCCGTTTCCAGACCGC 305 Query 2017 TATCGCTTCTATCAAACTTATTCAAGCATCTTCTGTTCTTGACTTGACAGAGGACGATTT 2076 | | || ||||| || || ||||| || ||| | ||| | || || || || || ||||| Sbjct 304 TTTGGCCTCTATTAAGCTCATTCAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTT 245 Query 2077 TGACTTCTTAACTCGCGACCGTGTCTGGATTGCTACCGACCGTTCACGCGCTCGCCG-TG 2135 || || | || | || || ||||||||||| ||||| || || ||||| || || Sbjct 244 CGATTTTCTGACGAGTAACAAAGTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTG 185 Query 2136 CTATCGAGGCTTGCGTATATGGAACACTGGACTTTGTCGGGTATCCTCGCTTTCCTGCTC 2195 | | ||||||||||| ||||| || ||||||||||| || || |||||||||||||||| Sbjct 184 C-GTTGAGGCTTGCGTTTATGGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC 126 Query 2196 CTGTTGAGTTTATTTCTGCCGTCATTGCTTATTACGTTCATCCCGTTAACATCCAAACCG 2255 |||||||||||||| ||||||||||||||||||| ||||||||||| ||||| ||||| | Sbjct 125 CTGTTGAGTTTATTGCTGCCGTCATTGCTTATTATGTTCATCCCGTCAACATTCAAACGG 66 Query 2256 CCTGTCTCATCATGGAAGGTGCTGAGTTTACCGAAAACATCGTCAATGGTGTTGAACGCC 2315 ||||||||||||||||||| ||||| ||||| |||||||| | ||||| || |||| | Sbjct 65 CCTGTCTCATCATGGAAGGCGCTGAATTTACGGAAAACATTATTAATGGCGTCGAACAAC 6 Query 2316 CCGTT 2320 | ||| Sbjct 5 CAGTT 1 >seq7100 Length=919 Score = 143 bits (158), Expect = 9e-31 Identities = 158/209 (76%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 4563 TATGTTTGGCTCTATCGCTGGCGGTATCGCCTCCGCACTTGCCGGAGGCCTTATGGGTAA 4622 ||||||||| |||| ||||||||||| || || || ||||| || ||| ||| ||| Sbjct 642 TATGTTTGGTGCTATTGCTGGCGGTATTGCTTCTGCTCTTGCTGGTGGCGCCATGTCTAA 583 Query 4623 ATTATTTGGCGGCGGTCAGTCCGCCGACTCTACCGGAATCCAAGGCAACGTCCTTGCTTC 4682 ||| ||||| |||||||| |||| ||| || || ||||| | || |||||| | Sbjct 582 ATTGTTTGGAGGCGGTCAAAAAGCCGCCTCCGGTGGCATTCAAGGTGATGTGCTTGCTAC 523 Query 4683 CGACAACAATGTTGTAGGTGCTAATGATGCTGGTATTAAATCTGCTATTCAGGGCTCTAC 4742 ||| |||||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 522 CGATAACAATACTGTAGGCATGGGTGATGCTGGTATTAAATCTGCCATTCAAGGCTCTAA 463 Query 4743 TGTCCCTAACTCTCAGGAAGCTGCTCCCT 4771 ||| |||||| || | || || | ||||| Sbjct 462 TGTTCCTAACCCTGATGAGGCCG-TCCCT 435 >seq4720 Length=582 Score = 131 bits (144), Expect = 6e-27 Identities = 244/355 (69%), Gaps = 9/355 (3%) Strand=Plus/Plus Query 2504 GGCAAATCTAAGGGTGCCCGTCTCTGGTATGTAGGCGGAACACAATACTAATCTTTTATG 2563 ||||| ||| || || ||||| ||||||||||| || ||||| |||| | | Sbjct 198 GGCAAGCGTAAAGGCGCTCGTCTTTGGTATGTAGGTGGTCAACAATTTTAAT--TGCA-- 253 Query 2564 TGGGACCGCGGTCCCACTCTATTTAAGGATACAAAAATGTCTAACGTTCAAACATCTGCG 2623 ||| | ||| ||| || || |||||| || |||||||| ||||||| || Sbjct 254 -GGGGCTTCGGCCCCT---TACTTGAGGATA-AATTATGTCTAATATTCAAACTGGCGCC 308 Query 2624 GACCGTGTACCTCATGACTTATCTCACCTTGTCTTTGAGGCTGGTAAAATTGGCCGCCTC 2683 || ||| | || |||||| | || || |||| ||| |||||| | ||||| || || Sbjct 309 GAGCGTATGCCGCATGACCTTTCCCATCTTGGCTTCCTTGCTGGTCAGATTGGTCGTCTT 368 Query 2684 AAAACTATCTCTTGGACGCCTGGTGGTGCTGGTGACTCTTTCGAGTGTGATATGGTTGGC 2743 | || || || || || | | ||||| ||||| |||||| || |||||| Sbjct 369 ATTACCATTTCAACTACTCCGGTTATCGCTGGCGACTCCTTCGAGATGGACGCCGTTGGC 428 Query 2744 GCTATTCGTCTGTCCCCTCTTCGTCGTGGCCTCGCTGTTGACTCACGCGTTGATATCTTT 2803 | | | ||||| || || | ||||||||||| ||| ||||||| || || || ||| Sbjct 429 GATCTCCGTCTTTCTCCATTGCGTCGTGGCCTTGCTATTGACTCTACTGTAGACATTTTT 488 Query 2804 CCTTTCTATATCCCACACCGTCATATCTACGGTCAGCAGTGGATTAACTTTATGA 2858 |||| ||| |||| || ||||| | || ||| | ||||||||||| || |||| Sbjct 489 ACTTTTTATGTCCCTCATCGTCACGTTTATGGTGAACAGTGGATTAAGTTCATGA 543 >seq8774 Length=2034 Score = 125 bits (138), Expect = 3e-25 Identities = 135/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 5149 TATAACCAAAAAGAGTCTATGTCACGCGTTGGCGCTATTCTCGAAAACACAAGCCTCACC 5208 ||| | || || ||||||| | ||||||| ||||| | |||||||| | || || Sbjct 60 TATCAACAGAAGGAGTCTACTGCTCGCGTTGCGTCTATTATGGAAAACACCAATCTTTCC 119 Query 5209 AAACAGCAACAAACTTCTGAAATTATGCGGCAAATGCTTACTCAGGCTCAAACCGCAGGT 5268 || || || || ||| || |||||||| |||||||||||||| |||||||| || ||| Sbjct 120 AAGCAACAGCAGGTTTCCGAGATTATGCGCCAAATGCTTACTCAAGCTCAAACGGCTGGT 179 Query 5269 CAATATTTTACAAATGACCAAATCAAGGAGCTTACGAGAAAAGTTGGTGCTGATATTGA 5327 || |||||||| ||||||||||| || || | || | || ||| ||||||| |||| Sbjct 180 CAGTATTTTACCAATGACCAAATTAAAGAAATGACTCGCAAGGTTAGTGCTGAGGTTGA 238 Score = 125 bits (138), Expect = 3e-25 Identities = 135/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 5149 TATAACCAAAAAGAGTCTATGTCACGCGTTGGCGCTATTCTCGAAAACACAAGCCTCACC 5208 ||| | || || ||||||| | ||||||| ||||| | |||||||| | || || Sbjct 1975 TATCAACAGAAGGAGTCTACTGCTCGCGTTGCGTCTATTATGGAAAACACCAATCTTTCC 1916 Query 5209 AAACAGCAACAAACTTCTGAAATTATGCGGCAAATGCTTACTCAGGCTCAAACCGCAGGT 5268 || || || || ||| || |||||||| |||||||||||||| |||||||| || ||| Sbjct 1915 AAGCAACAGCAGGTTTCCGAGATTATGCGCCAAATGCTTACTCAAGCTCAAACGGCTGGT 1856 Query 5269 CAATATTTTACAAATGACCAAATCAAGGAGCTTACGAGAAAAGTTGGTGCTGATATTGA 5327 || |||||||| ||||||||||| || || | || | || ||| ||||||| |||| Sbjct 1855 CAGTATTTTACCAATGACCAAATTAAAGAAATGACTCGCAAGGTTAGTGCTGAGGTTGA 1797 >seq7334 Length=501 Score = 87.8 bits (96), Expect = 6e-14 Identities = 172/248 (69%), Gaps = 10/248 (4%) Strand=Plus/Minus Query 3416 GTCCCACGCTTCTATGTTCCTGAGCATCGCGTAATTATGACTCTGGCGGTTACTCGCTTT 3475 || || || |||| ||||||||||||| || || | ||||| ||| || ||| ||| Sbjct 436 GTGCCGCGTTTCTTTGTTCCTGAGCATGGCACTATGTTTACTCTTGCGCTTGTTCGTTTT 377 Query 3476 CCGCCTACT--CATGAAATGGAAATGCACTATCTTGTAGGTAAAGAAAACTTAACTTATA 3533 ||||||||| | ||| || || || || ||| | ||||| || ||||||| Sbjct 376 CCGCCTACTGCGACTAAA--GAGATTCAGTACCTTAACGCTAAAGGTGCTTTGACTTATA 319 Query 3534 CCGATATTGCTTGTGACCCTGCACTG-ATGGCTAACCTGCCACCTCGTGAAGTATCCTTA 3592 ||||||||||| | ||||| | || ||||| ||| |||| || |||||| | || | Sbjct 318 CCGATATTGCTGGCGACCCCGTTTTGTATGGC-AACTTGCCGCCGCGTGAAATTTCTATG 260 Query 3593 AAAGAATTCTTCC--ACTCCTCACCCGATTCTGCTAAATTCAAAATCGCTGAGGGCCAAT 3650 || || | |||| || | | || ||| || || || || |||||||| || | Sbjct 259 AAGGATGTTTTCCGTTCTGGTGATTCG--TCTAAGAAGTTTAAGATTGCTGAGGGTCAGT 202 Query 3651 GGTATCGT 3658 |||||||| Sbjct 201 GGTATCGT 194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 17732650196630